Browse Element(s) Details


Os.15794.1.S1_at

Description gb:AK071024.1
DB_XREF= gi:32981047
TID=Os.15794.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15794 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023077I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077I15, full insert sequence.
FL= gb:AK071024.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0310011/11secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os11g034105/11secondary cell wall-related glycosyltransferase family 47, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03050OsAffx.31559.1.S1_at11/1112+1146065..1147587No apical meristem protein, expressed
LOC_Os12g03060Os.37912.1.S1_at11/1112+1150632..1154729expressed protein
LOC_Os12g03070Os.10524.2.S1_at11/1112+1155635..1157563FHA domain containing protein, expressed
LOC_Os12g03070Os.10524.1.S1_x_at10/1112+1155635..1157563FHA domain containing protein, expressed
LOC_Os12g03080Os.50512.1.S1_at10/1112+1157566..1164277NB-ARC domain containing protein, expressed
LOC_Os12g03090Os.9193.1.S1_s_at11/1112+1168638..116946040S ribosomal protein S16, putative, expressed
LOC_Os12g03090Os.37737.1.S1_at11/1112+1168638..116946040S ribosomal protein S16, putative, expressed
LOC_Os12g03100Os.15794.1.S1_at11/1112+1171749..1174786secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os12g03110Os.16784.1.S1_at8/1112+1179462..1180200ZF-HD protein dimerisation region containing protein
LOC_Os12g03120OsAffx.19462.1.S1_at11/1112+1182405..1182748hypothetical protein
LOC_Os12g03130Os.48443.1.S1_at11/1112+1188043..1190508CDC45-like protein, expressed
LOC_Os12g03140OsAffx.19463.1.S1_at7/1112+1191232..1192383hypothetical protein
LOC_Os12g03150Os.3389.2.S1_at11/1112+1199560..1200971Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15794.1.S1_at--641--1211Chr12:1172316..1172340 (25 bp)
AGTTTTCTATCTTTGTTCGCTCATC
LOC_Os12g03100
Os.15794.1.S1_at--259--6351Chr12:1172161..1172185 (25 bp)
GATGCGGTCCAAATGATCTGGCAAG
LOC_Os12g03100
Os.15794.1.S1_at--218--10032Chr12:1172129..1172153 (25 bp)
TAGAAAGGTGCCAGCAATCCGCCTG
LOC_Os12g03100
Os.15794.1.S1_at--560--1472Chr12:1172117..1172141 (25 bp)
AGCAATCCGCCTGAAGTCACATAGG
LOC_Os12g03100
Os.15794.1.S1_at--58--652Chr12:1171982..1172006 (25 bp)
ATGCATGTTATCTAGGGCCTTGGCT
LOC_Os12g03100
Os.15794.1.S1_at--1089--7552Chr12:1171968..1171992 (25 bp)
GGGCCTTGGCTAATCTAACTAGCAT
LOC_Os12g03100
Os.15794.1.S1_at--601--10012Chr12:1171949..1171973 (25 bp)
TAGCATTTCACTGACACATCCGTTG
LOC_Os12g03100
Os.15794.1.S1_at--297--6671Chr12:1171928..1171952 (25 bp)
GTTGCACACGTCTCATGGTTTCATG
LOC_Os12g03100
Os.15794.1.S1_at--369--411Chr12:1171859..1171883 (25 bp)
ATCAGGTTAATTGTTGGCTCATAGC
LOC_Os12g03100
Os.15794.1.S1_at--18--4832Chr12:1171843..1171867 (25 bp)
GCTCATAGCTTAGGTTAGGCTGTCC
LOC_Os12g03100
Os.15794.1.S1_at--988--10071Chr12:1171828..1171852 (25 bp)
TAGGCTGTCCAACCGAAGTGTATAC
LOC_Os12g03100
Target Sequence 
AGTTTTCTATCTTTGTTCGCTCATCTGATGCTGTAAAAAAGGGTTACTTGATGAGGCTGATTAGAGGAGTAAGCAAGCAT
CAATGGACAAGGATGTGGAATAGGCTGAAAGAAGTGGATAAACATTTTGAGTATCAATACCCATCACAGAAGGATGATGC
GGTCCAAATGATCTGGCAAGCATTGGCTAGAAAGGTGCCAGCAATCCGCCTGAAGTCACATAGGNCTAGAAGATTTNCTA
GATATGATAGNGGAAAATAAACATGGAGAAGATCCATTAGNCTAGAAGATTTTCAANNATCTGGCANAGGAAGAAAATAA
ACAGGAAGGCGGTGTATGCATGTTATCTAGGGCCTTGGCTAATCTAACTAGCATTTCACTGACACATCCGTTGCACACGT
CTCATGGTTTCATGAACATAATCGGACAGATTAGCAAGGAACAGTGAGATGTAAAGATATCAGGTTAATTGTTGGCTCAT
AGCTTAGGTTAGGCTGTCCAACCGAAGTGTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15794.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis