Browse Element(s) Details


Os.15814.1.S1_at

Description gb:CA760582
DB_XREF= gi:25804621
DB_XREF=BR060006A20B04.ab1
CLONE=BR060006A20B04.ab1
TID=Os.15814.1
CNT=9
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OJ1041F02.4), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g155708/11Mitogen-activated protein kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15540Os.9942.1.S1_x_at11/113+8525999..8530645HEAT repeat family protein, expressed
LOC_Os03g15540Os.48014.1.S1_x_at11/113+8525999..8530645HEAT repeat family protein, expressed
LOC_Os03g15550Os.51710.1.S1_at11/113+8538046..8541859Phosphatidylinositol-4-phosphate 5-kinase 2, putative, expressed
LOC_Os03g15550OsAffx.29890.1.A1_at1/113+8538046..8541859Phosphatidylinositol-4-phosphate 5-kinase 2, putative, expressed
LOC_Os03g15560Os.22830.1.S1_at7/113+8547498..8550881expressed protein
LOC_Os03g15570Os.15814.1.S1_at8/113+8551931..8556481Mitogen-activated protein kinase 1, putative, expressed
LOC_Os03g15580Os.45877.1.S1_at11/113+8560857..8575663AT hook motif family protein, expressed
LOC_Os03g15590Os.22416.1.S1_at11/113+8576188..8579649Eukaryotic translation initiation factor 4E type 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0006970biological_processresponse to osmotic stress
GO:0046686biological_processresponse to cadmium ion
GO:0004709molecular_functionMAP kinase kinase kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15814.1.S1_at--341--31Chr03:8552494..8552518 (25 bp)
ATTGTCAACAGCACAGTCGTCAACC
LOC_Os03g15570
Os.15814.1.S1_at--736--2611Chr03:8552473..8552497 (25 bp)
AACCCCAACCATTGCGTTTCATTTG
LOC_Os03g15570
Os.15814.1.S1_at--631--6571Chr03:8552446..8552470 (25 bp)
GATTCTTTCTCATAGTTTGCTGCGA
LOC_Os03g15570
Os.15814.1.S1_at--407--271Chr03:8552417..8552441 (25 bp)
ATATGTCGTGGTTTAGTCAGCGGCT
LOC_Os03g15570
Os.15814.1.S1_at--531--7111Chr03:8552402..8552426 (25 bp)
GTCAGCGGCTAATATTCAGCCCGGA
LOC_Os03g15570
Os.15814.1.S1_at--976--10311Chr03:8552092..8552116 (25 bp)
TTTACAGCCACGTCGCGATTGGCAT
LOC_Os03g15570
Os.15814.1.S1_at--556--4031Chr03:8552077..8552101 (25 bp)
CGATTGGCATTTGGCGTCTTGACGA
LOC_Os03g15570
Os.15814.1.S1_at--1119--4631NONE
GCGTCTTGACGATCACTTTTCAGTT
NONE
Os.15814.1.S1_at--813--3431Chr03:8552044..8552068 (25 bp)
CAGTTTTTACGCGTTGTTTGACTTG
LOC_Os03g15570
Os.15814.1.S1_at--782--6831NONE
GTTTGACTTGCGTGTAATTCCCAAA
NONE
Os.15814.1.S1_at--623--2431NONE
AAAATATTTACATGTCTCCGTCTAT
NONE
Target Sequence 
ATTGTCAACAGCACAGTCGTCAACCCCAACCATTGCGTTTCATTTGTTGATTCTTTCTCATAGTTTGCTGCGAGGGGATA
TGTCGTGGTTTAGTCAGCGGCTAATATTCAGCCCGGAGAATAGGTTAAATGTGCATTCAAGCGCATGAGTGTAAGTAGGA
ACTGACGATGTAAATATGCATGTTCGTGGTGGTGATTTATTTGTCTTTGCCATCATATGCCGTGCTTTGCCNAACTTTGG
AACTTCCGATGACAGTAGCTTAGGTTGGAATTGCCGTGCANGTNTTCTTGTTAGAACAAAGGGTGTACGGCAGCTCATCA
ACGATTCCTGTGCAGTGGTACGGGTATTCCAAAGGAAAAGCTACGATTGGTTGGTTGTTGTTCTCCAGTTGGCAGTTTGG
CGTTTACAGCCACGTCGCGATTGGCATTTGGCGTCTTGACGATCACTTTTCAGTTTTTACGCGTTGTTTGACTTGCGTGT
AATTCCCAAAAGAAGAGGGGCAGAAAATAATTCCCAAAAAAAATAGTGGGAAAAAAATATTTACATGTCTCCGTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis