Browse Element(s) Details


Os.15896.1.S1_at

Description gb:NM_195728.1
DB_XREF= gi:37532815
TID=Os.15896.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15896 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative antifreeze glycoprotein precursor (OSJNBa0073L20.14), mRNA.
PROD=putative antifreeze glycoprotein precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1809011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18042Os.46306.1.S1_x_at2/1110+8812471..8814672transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18060OsAffx.20535.1.S1_at11/1110+8820983..8826396retrotransposon protein, putative, unclassified
LOC_Os10g18070OsAffx.18282.1.S1_s_at11/1110+8826982..8833441expressed protein
LOC_Os10g18070Os.46184.1.A1_at11/1110+8826982..8833441expressed protein
LOC_Os10g18080OsAffx.8288.1.S1_at11/1110+8835647..8836474hypothetical protein
LOC_Os10g18084NANA10+8838519..8838840hypothetical protein
LOC_Os10g18090Os.15896.1.S1_at11/1110+8839441..8839887hypothetical protein
LOC_Os10g18099NANA10+8853247..8853564hypothetical protein
LOC_Os10g18110OsAffx.30442.1.S1_at11/1110+8857513..8860640WRKY DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15896.1.S1_at--218--2951Chr10:8839480..8839504 (25 bp)
AAGGCGACGCGGAATCGACCTGAGA
LOC_Os10g18090
Os.15896.1.S1_at--732--5791Chr10:8839485..8839509 (25 bp)
GACGCGGAATCGACCTGAGACGACG
LOC_Os10g18090
Os.15896.1.S1_at--297--3051Chr10:8839492..8839516 (25 bp)
AATCGACCTGAGACGACGGCAGCGG
LOC_Os10g18090
Os.15896.1.S1_at--105--9451Chr10:8839548..8839572 (25 bp)
TCGGATGCGACATGCGGCAGCTACA
LOC_Os10g18090
Os.15896.1.S1_at--683--1571Chr10:8839566..8839590 (25 bp)
AGCTACAGCGGCTCCGATGCAGTTT
LOC_Os10g18090
Os.15896.1.S1_at--268--3391Chr10:8839571..8839595 (25 bp)
CAGCGGCTCCGATGCAGTTTGTGGT
LOC_Os10g18090
Os.15896.1.S1_at--156--8231Chr10:8839596..8839620 (25 bp)
GGCAATGGCGACTCGGATATGGTCA
LOC_Os10g18090
Os.15896.1.S1_at--909--8471Chr10:8839601..8839625 (25 bp)
TGGCGACTCGGATATGGTCAGCTGC
LOC_Os10g18090
Os.15896.1.S1_at--33--9451Chr10:8839608..8839632 (25 bp)
TCGGATATGGTCAGCTGCGGTGGCG
LOC_Os10g18090
Os.15896.1.S1_at--1023--7591Chr10:8839658..8839682 (25 bp)
GGGCAGACGCGCAGATGCGACCCGC
LOC_Os10g18090
Os.15896.1.S1_at--614--8331Chr10:8839809..8839833 (25 bp)
GGCTGCGCCGATGCAGGCCGTGACG
LOC_Os10g18090
Target Sequence 
AAGGCGACGCGGAATCGACCTGAGACGACGGCAGCGGCGTGGATCTGTTCCGCGGTGGTGGCGGCGGCTCGGATGCGACA
TGCGGCAGCTACAGCGGCTCCGATGCAGTTTGTGGTGGCAATGGCGACTCGGATATGGTCAGCTGCGGTGGCGGCCTCAC
GGATGCGACCCGTGGCCGGGGCAGACGCGCAGATGCGACCCGCGGCGGTGGCGGCCGCGCCGATGCTGCCCGCGGCGACA
GCGGCCGCGGCGATGCTGCCCGCGGCGGCGGCCGTGTGGATGTGGCCCGCGGCGGCGACGGCCGCGCCGTTGCTACCCGC
GACGGCGACGGCTGCGCCGATGCAGGCCGTGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis