Browse Element(s) Details


Os.15908.1.S1_s_at

Description gb:AK101721.1
DB_XREF= gi:32986930
TID=Os.15908.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15908 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative response regulator (P0431G06.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061A20, full insert sequence.
FL= gb:AK101721.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7233011/11Two-component response regulator ARR8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72310Os.34890.1.S1_x_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72310Os.34890.1.S1_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72310Os.48364.1.S1_at11/111+42246479..42252151CW-type Zinc Finger family protein, expressed
LOC_Os01g72320Os.6169.1.S1_at11/111+42252446..42258451zinc finger protein, putative, expressed
LOC_Os01g72330Os.15908.1.S1_s_at11/111+42275801..42279237Two-component response regulator ARR8, putative, expressed
LOC_Os01g72340Os.28112.1.S1_at11/111+42281527..42289634Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain containing protein, expressed
LOC_Os01g72350Os.32632.1.S1_a_at10/111+42290975..42296957amidohydrolase family protein, putative, expressed
LOC_Os01g72370Os.12498.1.S1_at11/111+42298293..42304987Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g72360Os.12498.2.S1_at11/111+42298383..42300057expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000160biological_processtwo-component signal transduction system (phosphorelay)
GO:0006950biological_processresponse to stress
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009736biological_processcytokinin mediated signaling
GO:0010017biological_processred or far red light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0000156molecular_functiontwo-component response regulator activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15908.1.S1_s_at--499--471Chr01:42278669..42278693 (25 bp)
ATCTCCTCACCTGATCAGAGGACGA
LOC_Os01g72330
Os.15908.1.S1_s_at--808--10371Chr01:42278940..42278964 (25 bp)
TTTTGTTGTGCCAAAGGAACACCAT
LOC_Os01g72330
Os.15908.1.S1_s_at--202--2311Chr01:42278952..42278976 (25 bp)
AAAGGAACACCATGGCACCAAGTGG
LOC_Os01g72330
Os.15908.1.S1_s_at--458--5051Chr01:42278966..42278990 (25 bp)
GCACCAAGTGGTGTTCGTTAGAAAA
LOC_Os01g72330
Os.15908.1.S1_s_at--1093--331Chr01:42279027..42279051 (25 bp)
ATAAAGGCAGCACCTTGGATGCTTT
LOC_Os01g72330
Os.15908.1.S1_s_at--233--5091Chr01:42279036..42279060 (25 bp)
GCACCTTGGATGCTTTTAGGCTAAT
LOC_Os01g72330
Os.15908.1.S1_s_at--149--2711Chr01:42279115..42279139 (25 bp)
AAGCTAAGTGCTACTGCTACTATGA
LOC_Os01g72330
Os.15908.1.S1_s_at--1132--7311Chr01:42279122..42279146 (25 bp)
GTGCTACTGCTACTATGAATTGTCT
LOC_Os01g72330
Os.15908.1.S1_s_at--1127--9491Chr01:42279144..42279168 (25 bp)
TCTAGCAGATTGATGGACCAACCAA
LOC_Os01g72330
Os.15908.1.S1_s_at--633--4371Chr01:42279161..42279185 (25 bp)
CCAACCAACTGGTCTTTTGCAAATT
LOC_Os01g72330
Os.15908.1.S1_s_at--1084--10251Chr01:42279176..42279200 (25 bp)
TTTGCAAATTGTCCATGTATTCATT
LOC_Os01g72330
Target Sequence 
ATCTCCTCACCTGATCAGAGGACGAAGCCAAGATTGTCCTCCNCTANCANCGGCCTTGCAGTGGAGACCNTGATGAAACT
GAATTAATTAGAATCCCCCCNAACTNAAGAAANTGATTTTGGCCTCTTTTTCTGTTTTGATTTTTTTTATGGAGCTGCTC
ATGGAAGTATGGAACCNATTAGCTCCTGGGGGTTTTAATTAATTTACTTAATTAGTAGTTTGAGGTGAAAGGAAAGTCCA
CNGTACTTTTNCACTAGCTNTTGNTTCGANNNACAAATTTTGTTGTGCCAAAGGAACACCATGGCACCAAGTGGTGTTCG
TTAGAAAAGGAGTTGTGGGAATGAAATGGAAGGGGAAGTTGTANATAAAGGCAGCACCTTGGATGCTTTTAGGCTAATTT
TAAGGCTTATTATTCAAGCTGACTAGTGTTTTGTTTGAACTTGGAGAGGAAAAAGCTAAGTGCTACTGCTACTATGAATT
GTCTAGCAGATTGATGGACCAACCAACTGGTCTTTTGCAAATTGTCCATGTATTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15908.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis