Browse Element(s) Details


Os.15921.1.S1_at

Description gb:AK064860.1
DB_XREF= gi:32974878
TID=Os.15921.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15921 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000H19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000H19, full insert sequence.
FL= gb:AK064860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g622807/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62260Os.56320.1.S1_at11/113+35198200..35203360Ubiquinone biosynthesis mono0xygenase COQ6 family protein, expressed
LOC_Os03g62270OsAffx.3672.1.S1_at11/113+35205144..35208679MATE efflux family protein, expressed
LOC_Os03g62280Os.15921.1.S1_at7/113+35224339..35225995expressed protein
LOC_Os03g62290Os.57380.1.S1_at11/113+35227584..35228334expressed protein
LOC_Os03g62300OsAffx.13582.1.S1_at5/113+35230578..35238629hypothetical protein
LOC_Os03g62314OsAffx.8801.1.S1_at2/113+35243125..35248319retrotransposon protein, putative, LINE subclass
LOC_Os03g62330Os.56918.1.S1_at11/113+35248789..35249685expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15921.1.S1_at--686--3431Chr03:35225701..35225725 (25 bp)
CAGATGGATCTTCACAATGGCTCGT
LOC_Os03g62280
Os.15921.1.S1_at--357--5511Chr03:35225745..35225769 (25 bp)
GAACAAAGCCATACTGAGGCTGCTT
LOC_Os03g62280
Os.15921.1.S1_at--631--91Chr03:35225775..35225799 (25 bp)
ATTCCGTGCTGAGACGCGAGATAAT
LOC_Os03g62280
Os.15921.1.S1_at--1069--6031Chr03:35225792..35225895 (25 bp)
GAGATAATGGTACCTTGTCCGGTGC
LOC_Os03g62280
Os.15921.1.S1_at--945--2271Chr03:35225905..35225929 (25 bp)
AAACTTGGCCAATCGATACGTCCTA
LOC_Os03g62280
Os.15921.1.S1_at--77--7271Chr03:35225924..35225948 (25 bp)
GTCCTACCTGTGTCCATTATTTTGA
LOC_Os03g62280
Os.15921.1.S1_at--513--4131Chr03:35225965..35225989 (25 bp)
CGCTCAGGGCCATTTTATATCTCAC
LOC_Os03g62280
Os.15921.1.S1_at--177--391Chr03:35226066..35226090 (25 bp)
ATCACCATGTTATCTTTTCCTCTTT
NONE
Os.15921.1.S1_at--1159--811Chr03:35226141..35226165 (25 bp)
ATGGTTAGCGAGTTCGCTTGCTGTC
NONE
Os.15921.1.S1_at--59--4931Chr03:35226156..35226180 (25 bp)
GCTTGCTGTCATAACCAATTCTCTT
NONE
Os.15921.1.S1_at--993--5511Chr03:35226296..35226320 (25 bp)
GAAAAGGCATAAGCCCAGCTTTTTA
NONE
Target Sequence 
CAGATGGATCTTCACAATGGCTCGTGTGAAAAAAGTGNCCGAGGAGAACAAAGCCATACTGAGGCTGCTTNGGCNATTCC
GTGCTGAGACGCGAGATAATGGTACCTTGTCCGGTGCNGATACGAAAAACTTGGCCAATCGATACGTCCTACCTGTGTCC
ATTATTTTGAGTGGTATCATCATCGNCGCTCAGGGCCATTTTATATCTCACCTCTGAAATGGGGGCCCTGCTCGTTCGAA
GAATAAGTTATCTAACGGTGTGGATCCCCATGGTNCGGAGGCTAAATATCACCATGTTATCTTTTCCTCTTTTTTTTTTT
CATATTTTAAGAAAACGATACCGATGTGTTCTCTAGTGCTAATGGTTAGCGAGTTCGCTTGCTGTCATAACCAATTCTCT
TGNTCGTNNATGTTCGAATTGTCAATGTCTTCTTTCTCTGAAACTAGCGAAGTGCATGTGCCTTTGCAACAAATCNAAAT
AAATTGTTAAACACAACATGCTCATCGTTTTTTTGGAGAAAAGGCATAAGCCCAGCTTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis