Browse Element(s) Details


Os.15994.1.S1_at

Description gb:AK059106.1
DB_XREF= gi:32969124
TID=Os.15994.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15994 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D07, full insert sequence.
FL= gb:AK059106.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3022011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30180OsAffx.32258.1.A1_at3/117+17823790..17827524transposon protein, putative, Mutator sub-class
LOC_Os07g30190NANA7+17830368..17836580retrotransposon protein, putative, unclassified
LOC_Os07g30200Os.27164.1.A1_a_at11/117+17836836..17843293Asparaginyl-tRNA synthetase, putative, expressed
LOC_Os07g30200Os.27164.2.S1_at7/117+17836836..17843293Asparaginyl-tRNA synthetase, putative, expressed
LOC_Os07g30200Os.39963.1.S1_at1/117+17836836..17843293Asparaginyl-tRNA synthetase, putative, expressed
LOC_Os07g30210Os.50403.1.S1_at10/117+17844131..17847023Integral membrane protein DUF6 containing protein, expressed
LOC_Os07g30220Os.15994.1.S1_at11/117+17849521..17852776expressed protein
LOC_Os07g30220OsAffx.7245.1.S1_x_at1/117+17849521..17852776expressed protein
LOC_Os07g30220OsAffx.2609.2.S1_x_at1/117+17849521..17852776expressed protein
LOC_Os07g30230OsAffx.22940.2.S1_s_at11/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230Os.35344.3.S1_x_at11/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.5.S1_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.5.S1_x_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230Os.35344.18.S1_x_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.3.S1_x_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.1.S1_s_at9/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.22940.2.S1_at8/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30230OsAffx.31552.2.S1_at1/117+17855416..17862970transposon protein, putative, Mutator sub-class
LOC_Os07g30240Os.52801.1.S1_at9/117+17868931..17878469MutS family domain IV containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15994.1.S1_at--808--791Chr07:17850236..17850260 (25 bp)
ATGTGGCCCACACTGTTCTAGACAA
LOC_Os07g30220
Os.15994.1.S1_at--968--5551Chr07:17849845..17849869 (25 bp)
GAAAGCTGTGCATCCACTGAAACGA
LOC_Os07g30220
Os.15994.1.S1_at--1066--5531Chr07:17849827..17849851 (25 bp)
GAAACGAAGCATCCGTTGGGCTCAC
LOC_Os07g30220
Os.15994.1.S1_at--349--9371Chr07:17849784..17849808 (25 bp)
TCGACTGCGATGTTGTTTTTTGCTT
LOC_Os07g30220
Os.15994.1.S1_at--1036--10351Chr07:17849768..17849792 (25 bp)
TTTTTGCTTGGAACATGTGGCCCTG
LOC_Os07g30220
Os.15994.1.S1_at--979--6811Chr07:17849744..17849768 (25 bp)
GTTTTTCCGTGCTGTCATTCTGTGA
LOC_Os07g30220
Os.15994.1.S1_at--247--111Chr07:17849728..17849752 (25 bp)
ATTCTGTGACATTAGCTAGGCTGCT
LOC_Os07g30220
Os.15994.1.S1_at--523--8211Chr07:17849688..17849712 (25 bp)
GGCAACCTCTAATCCTATATTGTTA
LOC_Os07g30220
Os.15994.1.S1_at--1150--9591Chr07:17849626..17849650 (25 bp)
TCATTTCAGGCGCAGTTTTCATAGG
LOC_Os07g30220
Os.15994.1.S1_at--966--8191Chr07:17849602..17849626 (25 bp)
GGAAGTCTGCTTCTGCATGTGCTAG
LOC_Os07g30220
Os.15994.1.S1_at--1125--4991Chr07:17849588..17849612 (25 bp)
GCATGTGCTAGTCGTTGATCTGAAA
LOC_Os07g30220
Target Sequence 
ATGTGGCCCACACTGTTCTAGACAAAGATCAAGAACGACTAGACTATGACACCAAGAAGCTACAGAGCTTTGTGAAGGAN
ANATCGTTTGTGATATCAGAGAAAGGTGNCCTTGCAGACAGAATCAGCCCNGGCATCGTGAAATCCCTCGTCAGCNTTAC
AGATAANCNCAAGTAGGCNCNAGAGANAAGGTATCAGAGCATGTCTGTCTGCTCCACTCGNCAAGAAAGCTGTGCATCCA
CTGAAACGAAGCATCCGTTGGGCTCACCTGTAACCTGTTGTGCTATCGACTGCGATGTTGTTTTTTGCTTGGAACATGTG
GCCCTGTTTTTCCGTGCTGTCATTCTGTGACATTAGCTAGGCTGCTGTTGATTAGTTTTTAGGCAACCTCTAATCCTATA
TTGTTATGAATTGTATGACTAGGTNAGGCTATATGACNAGNTACTTCATTTCAGGCGCAGTTTTCATAGGGAAGTCTGCT
TCTGCATGTGCTAGTCGTTGATCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis