Browse Element(s) Details


Os.15998.1.S1_at

Description gb:AK111861.1
DB_XREF= gi:37988524
TID=Os.15998.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15998 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033027M14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033027M14, full insert sequence.
FL= gb:AK111861.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2557011/11histone deacetylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25530NANA8+15396511..15397944retrotransposon protein, putative, unclassified
LOC_Os08g25540NANA8+15400574..15402022retrotransposon protein, putative, unclassified
LOC_Os08g25550NANA8+15405672..15406445retrotransposon protein, putative, unclassified
LOC_Os08g25560NANA8+15407324..15409353retrotransposon protein, putative, unclassified
LOC_Os08g25570Os.15998.1.S1_at11/118+15421296..15426307histone deacetylase, putative, expressed
LOC_Os08g25580OsAffx.22940.3.S1_at11/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.22940.2.S1_s_at10/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.22940.3.S1_x_at8/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.22940.5.S1_x_at6/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.22940.1.S1_s_at6/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580Os.35344.18.S1_x_at3/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580Os.35344.3.S1_x_at3/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25580OsAffx.31552.2.S1_at1/118+15428599..15433482Transposable element protein, putative, MuDR
LOC_Os08g25590Os.10664.1.S1_at11/118+15438318..15441706Brain protein 44, putative, expressed
LOC_Os08g25600OsAffx.29347.1.S1_at11/118+15442831..15445641hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009861biological_processjasmonic acid and ethylene-dependent systemic resistance
GO:0016441biological_processposttranscriptional gene silencing
GO:0016575biological_processhistone deacetylation
GO:0005634cellular_componentnucleus
GO:0004407molecular_functionhistone deacetylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15998.1.S1_at--641--3551Chr08:15425080..15425104 (25 bp)
CATCAGATCCTGAAGCTCCAGAGCA
LOC_Os08g25570
Os.15998.1.S1_at--846--8131Chr08:15425198..15425222 (25 bp)
GGACATGGACAAGAGACCACCTCAG
LOC_Os08g25570
Os.15998.1.S1_at--27--6011Chr08:15425210..15425234 (25 bp)
GAGACCACCTCAGCGCAGTAGGTTA
LOC_Os08g25570
Os.15998.1.S1_at--569--6571Chr08:15425886..15425910 (25 bp)
GATTCCTAGAAGAGATCCTGCGATT
LOC_Os08g25570
Os.15998.1.S1_at--947--3531Chr08:15426071..15426095 (25 bp)
CATCCTCAAATGGTTTGTGCCAGAG
LOC_Os08g25570
Os.15998.1.S1_at--304--10831Chr08:15426085..15426109 (25 bp)
TTGTGCCAGAGGAGTGTATGCTAGA
LOC_Os08g25570
Os.15998.1.S1_at--1070--1451Chr08:15426107..15426131 (25 bp)
AGAATGATTCTTGCGCTGATATGGA
LOC_Os08g25570
Os.15998.1.S1_at--954--731Chr08:15426146..15426170 (25 bp)
ATGTTCATACTTCTCCGATGTGTTG
LOC_Os08g25570
Os.15998.1.S1_at--333--6271Chr08:15426162..15426186 (25 bp)
GATGTGTTGAACTCATACCGCAGAT
LOC_Os08g25570
Os.15998.1.S1_at--239--9611Chr08:15426174..15426198 (25 bp)
TCATACCGCAGATCCGCAATCAGTT
LOC_Os08g25570
Os.15998.1.S1_at--404--1671Chr08:15426205..15426229 (25 bp)
AGCCTGTCCAAACTTATTTTTTGTG
LOC_Os08g25570
Target Sequence 
CATCAGATCCTGAAGCTCCAGAGCAGGAAGAGGAGGACATGGACAAGAGACCACCTCAGCGCAGTAGGTTATGGAGTGGA
GGAGCTTATGAATNTGATACAGAGGATCCTGNCNACATGAAAACTGAGNCCAATGNCTTATNTGCCAGCTNTGTCATGAA
GGATGAATCGAATGATGATTCCTAGAAGAGATCCTGCGATTNTGGTTNTCAGCNCTCCTGATTTGTACGTGCNTGCTGAA
GAACAAGGAAAGTATNTGAAGATGTNTGATATNTGCGCCTGACCNTTTTGCAAAACAATGAATGCTTTTTTGGGTGCTTN
TAACTTTCAAGCNTGTCGGTAATTNTGGTTAGTCGGCGGCNCATCCTCAAATGGTTTGTGCCAGAGGAGTGTATGCTAGA
ATGATTCTTGCGCTGATATGGATTTATAGTTCTTTTATGTTCATACTTCTCCGATGTGTTGAACTCATACCGCAGATCCG
CAATCAGTTCCCCCTAGCCTGTCCAAACTTATTTTTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis