Browse Element(s) Details


Os.16002.1.S1_at

Description gb:CF322704
DB_XREF= gi:33793640
DB_XREF=HDN--01-N07.g1
CLONE=HDN--01-N07
TID=Os.16002.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.16002 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567297.1 (A.thaliana) contains similarity to Medicago truncatula N7 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4186011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41820Os.27324.1.S1_a_at11/1111+24647368..24652097U2 snRNP auxilliary factor, large subunit, splicing factor family protein, expressed
LOC_Os11g41830Os.50046.1.S1_at11/1111+24652445..24654168expressed protein
LOC_Os11g41830OsAffx.19315.1.S1_x_at1/1111+24652445..24654168expressed protein
LOC_Os11g41840OsAffx.19315.1.S1_x_at1/1111+24658671..24660289Sugar transporter family protein
LOC_Os11g41840Os.54779.1.S1_s_at1/1111+24658671..24660289Sugar transporter family protein
LOC_Os11g41850Os.54779.1.S1_s_at11/1111+24664429..24666390Sugar transporter family protein, expressed
LOC_Os11g41860Os.16002.1.S1_at11/1111+24670365..24672205F-box domain containing protein, expressed
LOC_Os11g41860OsAffx.19314.1.S1_s_at11/1111+24670365..24672205F-box domain containing protein, expressed
LOC_Os11g41870Os.22949.1.S1_at11/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870OsAffx.19315.1.S1_x_at11/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.11062.1.S1_at9/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.11829.1.S1_at3/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.54779.1.S1_s_at1/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41880OsAffx.7379.1.S1_at10/1111+24679945..24682122Potyvirus VPg interacting protein, putative
LOC_Os11g41890Os.9816.1.S2_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed
LOC_Os11g41890Os.9816.1.S1_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16002.1.S1_at--289--10171Chr11:24672056..24672080 (25 bp)
TATAATTAACCAAGTCTACGGCCGT
LOC_Os11g41860
Os.16002.1.S1_at--901--10491Chr11:24672061..24672085 (25 bp)
TTAACCAAGTCTACGGCCGTTATGC
LOC_Os11g41860
Os.16002.1.S1_at--338--2851Chr11:24672067..24672091 (25 bp)
AAGTCTACGGCCGTTATGCTGATCG
LOC_Os11g41860
Os.16002.1.S1_at--609--7151Chr11:24672069..24672093 (25 bp)
GTCTACGGCCGTTATGCTGATCGAT
LOC_Os11g41860
Os.16002.1.S1_at--572--9931Chr11:24672072..24672096 (25 bp)
TACGGCCGTTATGCTGATCGATCTG
LOC_Os11g41860
Os.16002.1.S1_at--729--8411Chr11:24672075..24672099 (25 bp)
GGCCGTTATGCTGATCGATCTGTTA
LOC_Os11g41860
Os.16002.1.S1_at--828--6771Chr11:24672079..24672103 (25 bp)
GTTATGCTGATCGATCTGTTAGATG
LOC_Os11g41860
Os.16002.1.S1_at--213--4051Chr11:24672090..24672114 (25 bp)
CGATCTGTTAGATGATGACTATACT
LOC_Os11g41860
Os.16002.1.S1_at--1083--5671Chr11:24672106..24672130 (25 bp)
GACTATACTACTCTGATTAACTATG
LOC_Os11g41860
Os.16002.1.S1_at--277--2031Chr11:24672112..24672136 (25 bp)
ACTACTCTGATTAACTATGCGTGGT
LOC_Os11g41860
Os.16002.1.S1_at--938--3851Chr11:24672118..24672142 (25 bp)
CTGATTAACTATGCGTGGTAACTAC
LOC_Os11g41860
Target Sequence 
TATAATTAACCAAGTCTACGGCCGTTATGCTGATCGATCTGTTAGATGATGACTATACTACTCTGATTAACTATGCGTGG
TAACTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis