Browse Element(s) Details


Os.16012.1.S1_at

Description gb:AK099986.1
DB_XREF= gi:32985195
TID=Os.16012.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16012 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130A09, full insert sequence.
FL= gb:AK099986.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3908011/11amino acid permease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39040NANA12+23979837..23980325retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39050OsAffx.20020.1.S1_x_at11/1112+23994523..23995360hypothetical protein
LOC_Os12g39060OsAffx.20021.1.S1_at11/1112+23995614..23995970hypothetical protein
LOC_Os12g39070Os.54260.1.S1_at11/1112+23997666..24002140TATA-binding protein 2, putative, expressed
LOC_Os12g39070Os.53520.1.A1_at1/1112+23997666..24002140TATA-binding protein 2, putative, expressed
LOC_Os12g39080Os.16012.1.S1_at11/1112+24004084..24006046amino acid permease family protein, putative, expressed
LOC_Os12g39080OsAffx.13037.1.S1_x_at1/1112+24004084..24006046amino acid permease family protein, putative, expressed
LOC_Os12g39090Os.54688.1.S1_at11/1112+24011650..24013552expressed protein
LOC_Os12g39100Os.55696.1.S1_at11/1112+24019122..24021234expressed protein
LOC_Os12g39110Os.14150.1.S1_at11/1112+24027070..24031072Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g39110OsAffx.16870.1.S1_x_at1/1112+24027070..24031072Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g39110OsAffx.19796.1.S1_x_at1/1112+24027070..24031072Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015326molecular_functioncationic amino acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16012.1.S1_at--345--9331Chr12:24005515..24005539 (25 bp)
TCGCCATGTACTACGGCGTCGAGCA
LOC_Os12g39080
Os.16012.1.S1_at--271--3371Chr12:24005549..24005573 (25 bp)
CACCGGCTGCGTCGAGTTCTTGACG
LOC_Os12g39080
Os.16012.1.S1_at--888--8951Chr12:24005585..24005609 (25 bp)
TGACAGCCTCCGTGGATCATCATCA
LOC_Os12g39080
Os.16012.1.S1_at--537--9611Chr12:24005619..24005643 (25 bp)
TCATCGGCAGCGTCCGACAACGGCG
LOC_Os12g39080
Os.16012.1.S1_at--916--4251Chr12:24005698..24005722 (25 bp)
CCGGAGAAGGCGTCAGTGTCAGCAA
LOC_Os12g39080
Os.16012.1.S1_at--565--8372Chr12:24005706..24005730 (25 bp)
GGCGTCAGTGTCAGCAAGGAGAATT
LOC_Os12g39080
Os.16012.1.S1_at--53--5231Chr12:24005749..24005773 (25 bp)
GAATTTATTACAGTGGCTTCTCTTC
LOC_Os12g39080
Os.16012.1.S1_at--718--10052Chr12:24005816..24005840 (25 bp)
TAGTTTTCTGAACTCCTGATGAGCT
LOC_Os12g39080
Os.16012.1.S1_at--191--2431Chr12:24005854..24005878 (25 bp)
AAAACTGTTGTCTTATGTGATCTGA
LOC_Os12g39080
Os.16012.1.S1_at--137--7651Chr12:24005892..24005916 (25 bp)
GGGAGCAAATCTTGCACATGTCAAA
LOC_Os12g39080
Os.16012.1.S1_at--1021--2131Chr12:24005963..24005987 (25 bp)
ACAGAGATATTCCTGTTTGTGTGAT
LOC_Os12g39080
Target Sequence 
TCGCCATGTACTACGGCGTCGAGCACATGAAGGCCACCGGCTGCGTCGAGTTCTTGACGCCGGTGCCGCCTGACAGCCTC
CGTGGATCATCATCATCATCATCCTCATCGGCAGCGTCCGACAACGGCGGCGACGACGACGTCGAGGACGTNTGCGCCCT
CCTCCTCGCCGCCGGCGAGCACGCCGGAGAAGGCGTCAGTGTCAGCAAGGAGAATTATTAGTGTACAGTGATTGGAATTT
ATTACAGTGGCTTCTCTTCAGTTTGAGTAAATATCTACAGAAAATGCAGAAGAATACAGTTTAGTTTTCTGAACTCCTGA
TGAGCTTTTGTCAGGAAAAAAAAACTGTTGTCTTATGTGATCTGAATCCTGAAAACATGGGAGCAAATCTTGCACATGTC
AAAGATTAATTTGCCCCCAAAGTGATAAATACAGTTTAGTTTATTAAGTACAGAGATATTCCTGTTTGTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis