Browse Element(s) Details


Os.16091.1.S1_at

Description gb:BI803702
DB_XREF= gi:16576406
DB_XREF=H117A03
CLONE=H117A03
TID=Os.16091.1
CNT=9
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.16091 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0015G17.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g404505/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40390Os.54052.1.S1_at11/113+22397941..22399643expressed protein
LOC_Os03g40400OsAffx.13263.1.S1_at11/113+22400439..22402342Protein kinase domain containing protein
LOC_Os03g40410Os.12987.1.S1_at11/113+22406162..22408570expressed protein
LOC_Os03g40430OsAffx.13264.1.S1_x_at11/113+22416916..22417542hypothetical protein
LOC_Os03g40430OsAffx.13264.1.S1_at11/113+22416916..22417542hypothetical protein
LOC_Os03g40440Os.16295.1.S1_at10/113+22418386..22419453expressed protein
LOC_Os03g40450Os.16091.1.S1_at5/113+22423845..22424454expressed protein
LOC_Os03g40460NANA3+22429152..22432739hypothetical protein
LOC_Os03g40470OsAffx.25451.1.S1_at11/113+22448832..22449116hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010150biological_processleaf senescence
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16091.1.S1_at--211--8571Chr03:22423864..22423888 (25 bp)
TGGTTGTGTTCCAGCTTGGGCGCAA
LOC_Os03g40450
Os.16091.1.S1_at--507--1551Chr03:22423876..22423900 (25 bp)
AGCTTGGGCGCAACGTGTGCACCAA
LOC_Os03g40450
Os.16091.1.S1_at--789--8671Chr03:22423891..22423913 (23 bp)
TGTGCACCAACCCTGAAGTCAAGAT
LOC_Os03g40450
Os.16091.1.S1_at--228--7091Chr03:22424277..22424296 (20 bp)
GTCAAGATCAGCAAGCGCAACCGCC
LOC_Os03g40450
Os.16091.1.S1_at--194--1031Chr03:22424332..22424356 (25 bp)
AGGTACAGCATGCATGGTTTCCGCC
LOC_Os03g40450
Os.16091.1.S1_at--522--7751Chr03:22424474..22424498 (25 bp)
GGTGTATTTGTTCGCTATAAGGACC
NONE
Os.16091.1.S1_at--983--351Chr03:22424490..22424514 (25 bp)
ATAAGGACCAGCGTTATGTGACGTA
NONE
Os.16091.1.S1_at--458--10191Chr03:22424541..22424565 (25 bp)
TATTTTAAGAACTCGGCCTGTGTGC
NONE
Os.16091.1.S1_at--203--2551Chr03:22424550..22424574 (25 bp)
AACTCGGCCTGTGTGCATGCAAAAA
NONE
Os.16091.1.S1_at--907--10351Chr03:22424612..22424636 (25 bp)
TTTATTTGTTGGTTCAGCACTTGAT
NONE
Os.16091.1.S1_at--65--791Chr03:22424664..22424688 (25 bp)
ATGTGAGTGTTGACAGAGCCTAAGA
NONE
Target Sequence 
TGGTTGTGTTCCAGCTTGGGCGCAACGTGTGCACCAACCCTGAAGTCAAGATCAGCAAGCGCAACCGCCGCAACGCAGTG
CCAGACAGCGCGGCGGAAGCGGAGAGGTACAGCATGCATGGTTTCCGCCGCTTCTTCGGCCGGCGTCGCCCAGAGGTGAT
GCCCTCCATCAACCGCTTCTTCTCCAACTCCGATCGACCCANTCATGATGAGAACANTGATGATTGATGAGTAATTCGCA
TTATGTGGTGTATTTGTTCGCTATAAGGACCAGCGTTATGTGACGTAATATGGTTAGATGTGAACTGGTTTATTATTTTA
AGAACTCGGCCTGTGTGCATGCAAAAANGAAAAAGCANGATTGGTAAATGTAATGTACTTTTACNTTTATTTGTTGGTTC
AGCACTTGATTTTTTTCTTTTATCAACAANCTTACCTATGTGAGTGTTGACAGAGCCTAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis