Browse Element(s) Details


Os.16109.1.S1_at

Description gb:AK100687.1
DB_XREF= gi:32985896
TID=Os.16109.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114A21, full insert sequence.
FL= gb:AK100687.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3347011/11calcineurin-like phosphoesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33450Os.11335.1.S1_at11/114+20033867..20035688expressed protein
LOC_Os04g33440Os.13884.1.S1_at11/114+20037246..20039093DNA-binding protein S1FA2, putative, expressed
LOC_Os04g33430NANA4+20039498..20039863hypothetical protein
LOC_Os04g33420Os.8884.2.S1_x_at10/114+20041598..20043702DNA-binding protein S1FA1, putative, expressed
LOC_Os04g33420Os.8884.1.S1_at9/114+20041598..20043702DNA-binding protein S1FA1, putative, expressed
LOC_Os04g33410OsAffx.30013.3.S1_x_at11/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.3.S1_at11/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.2.S1_at4/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.1.S1_x_at3/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.5.S1_x_at2/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33400OsAffx.14112.1.S1_at11/114+20048830..20050740F-box domain containing protein, expressed
LOC_Os04g33460Os.4179.1.S1_at1/114+20052404..200559361,4-alpha-glucan branching enzyme IIB, chloroplast precursor, putative, expressed
LOC_Os04g33470Os.16109.1.S1_at11/114+20057837..20062556calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os04g33480Os.11348.1.S1_at11/114+20065154..20068438histone deacetylase 1A, putative, expressed
LOC_Os04g33490OsAffx.14113.1.S1_s_at11/114+20069030..20071908alkaline/neutral invertase, putative, expressed
LOC_Os04g33490OsAffx.14113.1.S1_at8/114+20069030..20071908alkaline/neutral invertase, putative, expressed
LOC_Os04g33500NANA4+20072158..20075122Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16109.1.S1_at--425--4771Chr04:20058217..20058241 (25 bp)
GCTGCTATTGTGTTTCCTTCGAAGG
LOC_Os04g33470
Os.16109.1.S1_at--377--8171Chr04:20058172..20058196 (25 bp)
GGAACTTCATCCCAGAATCGATCCA
LOC_Os04g33470
Os.16109.1.S1_at--248--991Chr04:20058138..20058162 (25 bp)
AGGAGTAGTGCCCTGATACAGCCCT
LOC_Os04g33470
Os.16109.1.S1_at--480--331Chr04:20058123..20058147 (25 bp)
ATACAGCCCTGCAGGTAATTCCTTA
LOC_Os04g33470
Os.16109.1.S1_at--336--1031Chr04:20058111..20058135 (25 bp)
AGGTAATTCCTTACTGAGGCCCTCA
LOC_Os04g33470
Os.16109.1.S1_at--838--5531Chr04:20058027..20058051 (25 bp)
GAAACACACCTAGCGTGCTTAGATC
LOC_Os04g33470
Os.16109.1.S1_at--455--9851Chr04:20057982..20058006 (25 bp)
TAAATTACTGCCGTTTCCTTTCTAT
LOC_Os04g33470
Os.16109.1.S1_at--842--8331Chr04:20057957..20057981 (25 bp)
GGCTGTACCACTATATACCTTGAGA
LOC_Os04g33470
Os.16109.1.S1_at--157--5351Chr04:20057914..20057938 (25 bp)
GAAGATAACTCATTTTCCCCTTCCT
LOC_Os04g33470
Os.16109.1.S1_at--325--4191Chr04:20057897..20057921 (25 bp)
CCCTTCCTTGTTGCCATGAACAGAA
LOC_Os04g33470
Os.16109.1.S1_at--471--6551Chr04:20057870..20057894 (25 bp)
GATTATATGATTCTCCTGCCTTTTC
LOC_Os04g33470
Target Sequence 
GCTGCTATTGTGTTTCCTTCGAAGGAATTGATCAGGAGCACAGAAGGAACTTCATCCCAGAATCGATCCAGATATCATCA
GGAGTAGTGCCCTGATACAGCCCTGCAGGTAATTCCTTACTGAGGCCCTCACGTCAGCTACTGGATGACTGATAAGTGCT
CTATACAACATCTGAAGGAATTTGAATTCTGAAACACACCTAGCGTGCTTAGATCNAAAACAAGAAATCTCACATGTAAA
TTACTGCCGTTTCCTTTCTATGGCTGTACCACTATATACCTTGAGACCGCAAGTCCGCAACTACGAAGATAACTCATTTT
CCCCTTCCTTGTTGCCATGAACAGAACAGATTATATGATTCTCCTGCCTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis