Browse Element(s) Details


Os.16193.1.S1_at

Description gb:AK108482.1
DB_XREF= gi:32993691
TID=Os.16193.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16193 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-F05, full insert sequence.
FL= gb:AK108482.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5129011/11HVA22-like protein a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51240NANA2+31372122..31376793retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g51250NANA2+31377010..31378357retrotransposon protein, putative, unclassified
LOC_Os02g51260OsAffx.22461.4.S1_at11/112+31379642..31382690hypothetical protein
LOC_Os02g51260OsAffx.22461.3.S1_x_at8/112+31379642..31382690hypothetical protein
LOC_Os02g51260OsAffx.22461.2.S1_x_at6/112+31379642..31382690hypothetical protein
LOC_Os02g51270OsAffx.3035.1.S1_at11/112+31384253..31384768hypothetical protein
LOC_Os02g51280Os.47948.1.S1_at10/112+31390903..31393176TCP family transcription factor containing protein, expressed
LOC_Os02g51290Os.16193.1.S1_at11/112+31401276..31403716HVA22-like protein a, putative, expressed
LOC_Os02g51300Os.10683.1.A1_s_at5/112+31404472..31408302AP2 domain containing protein, expressed
LOC_Os02g51310OsAffx.31549.1.S1_at11/112+31410992..31411809TCP family transcription factor containing protein
LOC_Os02g51310OsAffx.31549.1.S1_x_at11/112+31410992..31411809TCP family transcription factor containing protein
LOC_Os02g51310OsAffx.31549.2.S1_x_at4/112+31410992..31411809TCP family transcription factor containing protein
LOC_Os02g51320OsAffx.12587.1.S1_s_at11/112+31418097..31419352bHLH protein, putative, expressed
LOC_Os02g51330Os.8525.2.S1_x_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51330Os.8525.2.S1_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51330Os.8525.1.S1_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0042538biological_processhyperosmotic salinity response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16193.1.S1_at--901--8291Chr02:31402889..31402913 (25 bp)
GGCTTCCTTTATGGTCTTATGCTAA
LOC_Os02g51290
Os.16193.1.S1_at--712--7812Chr02:31402901..31402925 (25 bp)
GGTCTTATGCTAAATTGTTTTTCAA
LOC_Os02g51290
Os.16193.1.S1_at--101--9751Chr02:31402922..31402946 (25 bp)
TCAATTGCTGGTTGGTCTTGCCCTA
LOC_Os02g51290
Os.16193.1.S1_at--258--10711Chr02:31402939..31402963 (25 bp)
TTGCCCTACTTCAATGGTGCTGCAC
LOC_Os02g51290
Os.16193.1.S1_at--749--811Chr02:31402952..31402976 (25 bp)
ATGGTGCTGCACATGTCTATGAACA
LOC_Os02g51290
Os.16193.1.S1_at--798--7151Chr02:31402966..31402990 (25 bp)
GTCTATGAACACTTTGTGAGGCCAA
LOC_Os02g51290
Os.16193.1.S1_at--101--10831Chr02:31402979..31403003 (25 bp)
TTGTGAGGCCAATGGTTGTCAACCA
LOC_Os02g51290
Os.16193.1.S1_at--3--6771Chr02:31403011..31403035 (25 bp)
GTTAATATCTGGTACATCCCAAGAA
LOC_Os02g51290
Os.16193.1.S1_at--21--711Chr02:31403039..31403063 (25 bp)
ATGAGTCAGATAGACCCGATGATGT
LOC_Os02g51290
Os.16193.1.S1_at--1028--4051Chr02:31403055..31403079 (25 bp)
CGATGATGTGATATCAGCTGCGCAG
LOC_Os02g51290
Os.16193.1.S1_at--36--1611Chr02:31403070..31403094 (25 bp)
AGCTGCGCAGAGATACATTGAACAA
LOC_Os02g51290
Target Sequence 
GGCTTCCTTTATGGTCTTATGCTAAATTGTTTTTCAATTGCTGGTTGGTCTTGCCCTACTTCAATGGTGCTGCACATGTC
TATGAACACTTTGTGAGGCCAATGGTTGTCAACCAGCAAANTAGTTAATATCTGGTACATCCCAAGAAAGGATGAGTCAG
ATAGACCCGATGATGTGATATCAGCTGCGCAGAGATACATTGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis