Browse Element(s) Details


Os.16231.1.S2_at

Description gb:AK103814.1
DB_XREF= gi:32989023
TID=Os.16231.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16231 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033147C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033147C19, full insert sequence.
FL= gb:AK103814.1 gb:AK073743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3689011/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36830OsAffx.26357.1.S1_at11/114+22017500..22019654expressed protein
LOC_Os04g36840OsAffx.4007.1.S1_at11/114+22020147..22023130pentatricopeptide, putative, expressed
LOC_Os04g36850OsAffx.26358.1.S1_at10/114+22024778..22027275expressed protein
LOC_Os04g36859Os.8619.1.S1_at7/114+22027808..22029970signal peptidase complex 25 kDa subunit, putative, expressed
LOC_Os04g36859Os.52782.1.S1_at1/114+22027808..22029970signal peptidase complex 25 kDa subunit, putative, expressed
LOC_Os04g36868NANA4+22030156..22030559expressed protein
LOC_Os04g36880NANA4+22038055..22038429expressed protein
LOC_Os04g36890Os.16231.1.S1_s_at11/114+22039220..22043505peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os04g36890Os.16231.1.S2_at11/114+22039220..22043505peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os04g36900Os.54731.1.S1_at10/114+22045539..22047542expressed protein
LOC_Os04g36900OsAffx.14173.1.S1_x_at8/114+22045539..22047542expressed protein
LOC_Os04g36910Os.19133.1.S1_at11/114+22048011..22053244expressed protein
LOC_Os04g37410OsAffx.14174.1.S1_at11/114+22065231..22066560hypothetical protein
LOC_Os04g37420OsAffx.26360.1.S1_at11/114+22068482..22068706hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16231.1.S2_at--183--1951Chr04:22043216..22043240 (25 bp)
ACTGAAGTGGTCTCGCAAGAGTTTT
LOC_Os04g36890
Os.16231.1.S2_at--1048--10231Chr04:22043238..22043262 (25 bp)
TTTGTAGGACACCATTTCCCTTCAG
LOC_Os04g36890
Os.16231.1.S2_at--531--2351Chr04:22043264..22043288 (25 bp)
AAAGCTATCTTCATTTAGACACAGA
LOC_Os04g36890
Os.16231.1.S2_at--347--5631Chr04:22043281..22043305 (25 bp)
GACACAGACCATATGCCTTATTTTG
LOC_Os04g36890
Os.16231.1.S2_at--1161--4431Chr04:22043295..22043319 (25 bp)
GCCTTATTTTGTGAACTGTAGCCAT
LOC_Os04g36890
Os.16231.1.S2_at--282--7611Chr04:22043336..22043360 (25 bp)
GGGCACAGCAGAGCTTGTCACTTCG
LOC_Os04g36890
Os.16231.1.S2_at--1049--6531Chr04:22043360..22043384 (25 bp)
GATTTTTCTTCAGTGCTCGATTTTC
LOC_Os04g36890
Os.16231.1.S2_at--886--7311Chr04:22043372..22043396 (25 bp)
GTGCTCGATTTTCATACAGTTTCTA
LOC_Os04g36890
Os.16231.1.S2_at--316--6871Chr04:22043423..22043447 (25 bp)
GTATTTCCGCTTTGAAGTTTCAACT
LOC_Os04g36890
Os.16231.1.S2_at--711--5711Chr04:22043448..22043472 (25 bp)
GACTGGATTACGAGAAACCGCTGTA
LOC_Os04g36890
Os.16231.1.S2_at--94--1771Chr04:22043464..22043488 (25 bp)
ACCGCTGTAACTATTTCGTTTACTG
LOC_Os04g36890
Target Sequence 
ACTGAAGTGGTCTCGCAAGAGTTTTGTAGGACACCATTTCCCTTCAGCAAAGCTATCTTCATTTAGACACAGACCATATG
CCTTATTTTGTGAACTGTAGCCATGTAGGCTTAATTTTGGGGGCACAGCAGAGCTTGTCACTTCGATTTTTCTTCAGTGC
TCGATTTTCATACAGTTTCTAATANNNNNNNNGNNNNTNGTNNNTNNGTATTTCCGCTTTGAAGTTTCAACTGACTGGAT
TACGAGAAACCGCTGTAACTATTTCGTTTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16231.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis