Browse Element(s) Details


Os.16233.1.S1_a_at

Description gb:AK100631.1
DB_XREF= gi:32985840
TID=Os.16233.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.16233 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023109E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023109E08, full insert sequence.
FL= gb:AK100631.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0990011/11Terpene synthase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09860Os.9112.1.S1_at11/114+5270900..5286517Actin, putative, expressed
LOC_Os04g09860Os.9112.2.S1_at10/114+5270900..5286517Actin, putative, expressed
LOC_Os04g09860OsAffx.21318.2.S1_at1/114+5270900..5286517Actin, putative, expressed
LOC_Os04g09870NANA4+5287292..5289085hypothetical protein
LOC_Os04g09880OsAffx.3759.1.S1_at11/114+5291443..5292815hypothetical protein
LOC_Os04g09880OsAffx.23961.1.S1_s_at1/114+5291443..5292815hypothetical protein
LOC_Os04g09880OsAffx.23961.2.S1_s_at1/114+5291443..5292815hypothetical protein
LOC_Os04g09900Os.16233.1.S1_a_at11/114+5298069..5306436Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os04g09910NANA4+5308069..5308886retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09920Os.53296.1.S1_at11/114+5312345..5314485Cytochrome P450 family protein, expressed
LOC_Os04g09930NANA4+5318771..5323090retrotransposon protein, putative, unclassified
LOC_Os04g09940Os.28943.1.S1_x_at1/114+5323736..5327086retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0009899molecular_functionent-kaurene synthase activity
GO:0009905molecular_functionent-copalyl diphosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16233.1.S1_a_at--1060--3471Chr04:5305318..5305342 (25 bp)
CATCGAGATTTTTGGAGGACGGCAT
LOC_Os04g09900
Os.16233.1.S1_a_at--545--4811Chr04:5305354..5305378 (25 bp)
GCAAAGACCGGACCTTTGGGAGTAT
LOC_Os04g09900
Os.16233.1.S1_a_at--525--10251Chr04:5305368..5305392 (25 bp)
TTTGGGAGTATTCCCAGCTCGAGCA
LOC_Os04g09900
Os.16233.1.S1_a_at--476--3471Chr04:5305423..5305837 (25 bp)
CAGGAGGGTTCTTGCCCAGGAGAAT
LOC_Os04g09900
Os.16233.1.S1_a_at--617--6331Chr04:5305888..5305912 (25 bp)
GATGCAGGAATTGACTCGGCGCGTT
LOC_Os04g09900
Os.16233.1.S1_a_at--201--1091Chr04:5305917..5305941 (25 bp)
AGGGCTGCAGCGCTATTAACAGACT
LOC_Os04g09900
Os.16233.1.S1_a_at--7--10211Chr04:5305930..5305954 (25 bp)
TATTAACAGACTAACCCGGGAGACG
LOC_Os04g09900
Os.16233.1.S1_a_at--467--5991Chr04:5305949..5305973 (25 bp)
GAGACGTTTCTCCATGTGGTGAAGA
LOC_Os04g09900
Os.16233.1.S1_a_at--864--5351Chr04:5305969..5305993 (25 bp)
GAAGAGCTTCTGCTATGTCGCCTAC
LOC_Os04g09900
Os.16233.1.S1_a_at--857--9951Chr04:5306051..5306075 (25 bp)
TAGGAACAAATTACCCCGACTCATC
LOC_Os04g09900
Os.16233.1.S1_a_at--685--4091Chr04:5306067..5306091 (25 bp)
CGACTCATCTACACTCCTTATAAAA
LOC_Os04g09900
Target Sequence 
CATCGAGATTTTTGGAGGACGGCATGTTTTGACNGGGCAAAGACCGGACCTTTGGGAGTATTCCCAGCTCGAGCAGCTCA
CCTCCTCCATCTGCNGCAAACTTTCNCAGGAGGGTTCTTGCCCAGGAGAATGGGGAAAGTACGGAGAAAGTTGAGGAGAT
AGACCANCNANTGGATTTGGAGATGCAGGAATTGACTCGGCGCGTTCTNCAGGGCTGCAGCGCTATTAACAGACTAACCC
GGGAGACGTTTCTCCATGTGGTGAAGAGCTTCTGCTATGTCGCCTACTGCTCACCTGAGACNATTGATANCCACATCGAC
AAGGTCATATTCCAAGATGTGATTTAGGAACAAATTACCCCGACTCATCTACACTCCTTATAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16233.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis