Browse Element(s) Details

Os.16285.1.S1_a_at

Description

gb:AK069553.1
DB_XREF= gi:32979577
TID=Os.16285.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023020O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020O11, full insert sequence.
FL= gb:AK069553.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g46750	11/11	mannosyltransferase family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g46690	OsAffx.3534.1.S1_at	11/11	3	+	26374411..26376763	F-box domain containing protein
LOC_Os03g46710	Os.50529.1.S1_x_at	11/11	3	+	26382594..26387978	FYVE zinc finger family protein, expressed
LOC_Os03g46710	OsAffx.25584.1.S1_at	8/11	3	+	26382594..26387978	FYVE zinc finger family protein, expressed
LOC_Os03g46720	OsAffx.25585.1.S1_at	11/11	3	+	26389883..26391746	F-box domain containing protein
LOC_Os03g46730	Os.51760.1.S1_at	11/11	3	+	26391945..26393507	expressed protein
LOC_Os03g46730	Os.51760.2.S1_at	10/11	3	+	26391945..26393507	expressed protein
LOC_Os03g46740	Os.34369.1.S1_at	11/11	3	+	26394467..26397972	ABC transporter family protein, expressed
LOC_Os03g46750	Os.16285.1.S1_a_at	11/11	3	+	26398078..26400679	mannosyltransferase family protein, putative, expressed
LOC_Os03g46760	NA	NA	3	+	26401404..26402936	hypothetical protein
LOC_Os03g46770	Os.46231.2.S1_x_at	11/11	3	+	26409256..26410378	retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46770	Os.46231.1.S1_a_at	11/11	3	+	26409256..26410378	retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46770	Os.46902.1.S1_x_at	1/11	3	+	26409256..26410378	retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46780	OsAffx.25586.1.S1_at	11/11	3	+	26411457..26413586	hypothetical protein
LOC_Os03g46790	OsAffx.3535.1.S1_at	11/11	3	+	26415393..26416399	Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g46800	NA	NA	3	+	26420988..26423339	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46810	NA	NA	3	+	26423976..26425551	retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46820	NA	NA	3	+	26425664..26426578	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006506	biological_process	GPI anchor biosynthesis
GO:0009790	biological_process	embryonic development
GO:0009832	biological_process	cell wall biosynthesis (sensu Magnoliophyta)
GO:0030244	biological_process	cellulose biosynthesis
GO:0051301	biological_process	cell division
GO:0000030	molecular_function	mannosyltransferase activity
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.16285.1.S1_a_at--483--249	1	Chr03:26400030..26400054 (25 bp)	AACAGTTGCATTTGTTGCGTTTAAC	LOC_Os03g46750
Os.16285.1.S1_a_at--625--33	1	Chr03:26400157..26400181 (25 bp)	ATACTTTGTGTGGTTCTTTTGCCTG	LOC_Os03g46750
Os.16285.1.S1_a_at--1144--279	1	Chr03:26400224..26400248 (25 bp)	AAGGGTCTGGCCTGTATATTGGTGT	LOC_Os03g46750
Os.16285.1.S1_a_at--532--867	1	Chr03:26400276..26400300 (25 bp)	TGTGGGCGTACATGCTTGAATTCAA	LOC_Os03g46750
Os.16285.1.S1_a_at--256--239	1	Chr03:26400307..26400331 (25 bp)	AAACGTCTTCATACCGCTCTGGGCA	LOC_Os03g46750
Os.16285.1.S1_a_at--749--103	1	Chr03:26400334..26400358 (25 bp)	AGGTCTCATGTTCCTGGCTGCAAAC	LOC_Os03g46750
Os.16285.1.S1_a_at--339--251	1	Chr03:26400356..26400380 (25 bp)	AACATCTTTGTTATGCTCATGGTGA	LOC_Os03g46750
Os.16285.1.S1_a_at--377--775	1	Chr03:26400376..26400400 (25 bp)	GGTGATCAACCACCACAAGTTCACT	LOC_Os03g46750
Os.16285.1.S1_a_at--650--413	1	Chr03:26400402..26400426 (25 bp)	CGCTCTTCTCATCATCAACGGTGAA	LOC_Os03g46750
Os.16285.1.S1_a_at--616--93	1	Chr03:26400453..26400477 (25 bp)	AGGAATAGCATATACCACCCTTCTT	LOC_Os03g46750
Os.16285.1.S1_a_at--31--691	1	Chr03:26400548..26400572 (25 bp)	GTATCTTATGCGACTTGCATCCTTG	LOC_Os03g46750

Target Sequence

AACAGTTGCATTTGTTGCGTTTAACANAGGTCANTGACAGCACAATACTTTGTGTGGTTCTTTTGCCTGCTACCCCTCAT
CCTCCCTTGGACTACCATGAAGCTGAAGTGGAAGGGTCTGGCCTGTATATTGGTGTGGATGGGGTCCCNACTGCNCTGGC
TGATGTGGGCGTACATGCTTGAATTCAAGGGCCNAAACGTCTTCATACCGCTCTGGGCAGCAGGTCTCATGTTCCTGGCT
GCAAACATCTTTGTTATGCTCATGGTGATCAACCACCACAAGTTCACTCCGCTCTTCTCATCATCAACGGTGAAGTCTGC
AAGCAAGATTGCTGCCAAGAAGGAATAGCATATACCACCCTTCTTTTTTATTACTTTACCAGCTGATGTATTTCTGGAGA
CANTGGATACTGATTTTTCTTTTTAATGTTCTACTAGTATCTTATGCGACTTGCATCCTTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis