Browse Element(s) Details


Os.46231.2.S1_x_at

Description gb:AU161771
DB_XREF= gi:10931497
DB_XREF=AU161771
CLONE=S5408
TID=Os.46231.2
CNT=16
FEA=EST
TIER=Stack
STK=7
UG=Os.46231 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-B02, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4677011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46710Os.50529.1.S1_x_at11/113+26382594..26387978FYVE zinc finger family protein, expressed
LOC_Os03g46710OsAffx.25584.1.S1_at8/113+26382594..26387978FYVE zinc finger family protein, expressed
LOC_Os03g46720OsAffx.25585.1.S1_at11/113+26389883..26391746F-box domain containing protein
LOC_Os03g46730Os.51760.1.S1_at11/113+26391945..26393507expressed protein
LOC_Os03g46730Os.51760.2.S1_at10/113+26391945..26393507expressed protein
LOC_Os03g46740Os.34369.1.S1_at11/113+26394467..26397972ABC transporter family protein, expressed
LOC_Os03g46750Os.16285.1.S1_a_at11/113+26398078..26400679mannosyltransferase family protein, putative, expressed
LOC_Os03g46760NANA3+26401404..26402936hypothetical protein
LOC_Os03g46770Os.46231.2.S1_x_at11/113+26409256..26410378retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46770Os.46231.1.S1_a_at11/113+26409256..26410378retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46770Os.46902.1.S1_x_at1/113+26409256..26410378retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46780OsAffx.25586.1.S1_at11/113+26411457..26413586hypothetical protein
LOC_Os03g46790OsAffx.3535.1.S1_at11/113+26415393..26416399Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g46800NANA3+26420988..26423339retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46810NANA3+26423976..26425551retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46820NANA3+26425664..26426578hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46231.2.S1_x_at--572--6131Chr03:26409814..26410087 (25 bp)
GAGGGCATGAACGGCGACTCCGGCG
LOC_Os03g46770
Os.46231.2.S1_x_at--222--1071Chr03:26409815..26410088 (25 bp)
AGGGCATGAACGGCGACTCCGGCGG
LOC_Os03g46770
Os.46231.2.S1_x_at--237--4551Chr03:26410113..26410137 (25 bp)
GCCCATCGTGGCCAGTTATCCTTAG
LOC_Os03g46770
Os.46231.2.S1_x_at--1081--491Chr03:26410117..26410141 (25 bp)
ATCGTGGCCAGTTATCCTTAGCTAT
LOC_Os03g46770
Os.46231.2.S1_x_at--201--7551Chr03:26410120..26410144 (25 bp)
GTGGCCAGTTATCCTTAGCTATCCG
LOC_Os03g46770
Os.46231.2.S1_x_at--833--8791Chr03:26410238..26410262 (25 bp)
TGTTCTTCGTCCGTGATGTTACCAT
LOC_Os03g46770
Os.46231.2.S1_x_at--854--9571Chr03:26410241..26410265 (25 bp)
TCTTCGTCCGTGATGTTACCATGAA
LOC_Os03g46770
Os.46231.2.S1_x_at--576--6771Chr03:26410255..26410279 (25 bp)
GTTACCATGAATTGAGTTCGCTTTG
LOC_Os03g46770
Os.46231.2.S1_x_at--720--10111Chr03:26410282..26410306 (25 bp)
TATGGTGTTTGAACTGCTTGTTGCT
LOC_Os03g46770
Os.46231.2.S1_x_at--538--5471Chr03:26410292..26410316 (25 bp)
GAACTGCTTGTTGCTATCTATCGGA
LOC_Os03g46770
Os.46231.2.S1_x_at--736--4871Chr03:26410304..26410328 (25 bp)
GCTATCTATCGGAATGAAATGAAAT
LOC_Os03g46770
Target Sequence 
GAGGGCATGAACGGCGACTCCGGCGGGAACTGGAGGAACTGATTGGTGGGGCCCATCGTGGCCAGTTATCCTTAGCTATC
CGTGTCAGAATCATCTTATCATCGAGTCGAGTCGTTATCGTGTCCAGTGGCTCTCTCGAGTCGAGAAGCCCTCTATCCAT
CCATCCAGTGTTAGGTGTTCTTCGTCCGTGATGTTACCATGAATTGAGTTCGCTTTGGTTATGGTGTTTGAACTGCTTGT
TGCTATCTATCGGAATGAAATGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46231.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis