Browse Element(s) Details


Os.34369.1.S1_at

Description gb:AK071650.1
DB_XREF= gi:32981673
TID=Os.34369.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.34369 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023105K03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105K03, full insert sequence.
FL= gb:AK071650.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4674011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46690OsAffx.3534.1.S1_at11/113+26374411..26376763F-box domain containing protein
LOC_Os03g46710Os.50529.1.S1_x_at11/113+26382594..26387978FYVE zinc finger family protein, expressed
LOC_Os03g46710OsAffx.25584.1.S1_at8/113+26382594..26387978FYVE zinc finger family protein, expressed
LOC_Os03g46720OsAffx.25585.1.S1_at11/113+26389883..26391746F-box domain containing protein
LOC_Os03g46730Os.51760.1.S1_at11/113+26391945..26393507expressed protein
LOC_Os03g46730Os.51760.2.S1_at10/113+26391945..26393507expressed protein
LOC_Os03g46740Os.34369.1.S1_at11/113+26394467..26397972ABC transporter family protein, expressed
LOC_Os03g46750Os.16285.1.S1_a_at11/113+26398078..26400679mannosyltransferase family protein, putative, expressed
LOC_Os03g46760NANA3+26401404..26402936hypothetical protein
LOC_Os03g46770Os.46231.2.S1_x_at11/113+26409256..26410378retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46770Os.46231.1.S1_a_at11/113+26409256..26410378retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46770Os.46902.1.S1_x_at1/113+26409256..26410378retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46780OsAffx.25586.1.S1_at11/113+26411457..26413586hypothetical protein
LOC_Os03g46790OsAffx.3535.1.S1_at11/113+26415393..26416399Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g46800NANA3+26420988..26423339retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34369.1.S1_at--159--5651Chr03:26395129..26395151 (23 bp)
GACAGGTTGTTATTTCTCCATGAGG
LOC_Os03g46740
Os.34369.1.S1_at--279--9471Chr03:26394935..26394959 (25 bp)
TCTGGTAGCTTGGATGGACCGATAC
LOC_Os03g46740
Os.34369.1.S1_at--212--5831Chr03:26394919..26394943 (25 bp)
GACCGATACGGTACTTCTGAGAATT
LOC_Os03g46740
Os.34369.1.S1_at--352--551Chr03:26394891..26394915 (25 bp)
ATCCAAGTTTTCTTAATGCTCCCTG
LOC_Os03g46740
Os.34369.1.S1_at--359--3511Chr03:26394807..26394831 (25 bp)
CATGTGACTTGTATCTGGTTACCTT
LOC_Os03g46740
Os.34369.1.S1_at--158--4311Chr03:26394786..26394810 (25 bp)
CCTTAGGCAGGTCTGGAGGTACACA
LOC_Os03g46740
Os.34369.1.S1_at--113--2151Chr03:26394764..26394788 (25 bp)
ACAGCAAAGTTTCTGCCTTGGCATT
LOC_Os03g46740
Os.34369.1.S1_at--917--7051Chr03:26394610..26394634 (25 bp)
GTAACCTTGATTGTAGCAGCTGCTT
LOC_Os03g46740
Os.34369.1.S1_at--376--3391Chr03:26394594..26394618 (25 bp)
CAGCTGCTTGGGTGTTGGTGTCATA
LOC_Os03g46740
Os.34369.1.S1_at--500--6611Chr03:26394510..26394534 (25 bp)
GATTGGTTGTATTTGCAGGCCTGAC
LOC_Os03g46740
Os.34369.1.S1_at--209--891Chr03:26394494..26394518 (25 bp)
AGGCCTGACTGCTAGTACCATAACA
LOC_Os03g46740
Target Sequence 
GACAGGTTGTTATTTCTCCATGAGGGGAAGGTAGTGTGGGAAGGAATGACACAAGAATTTACTACATCAACAAATCCTAT
TGTAAAACAGTTTGCATCTGGTAGCTTGGATGGACCGATACGGTACTTCTGAGAATTATAATCCAAGTTTTCTTAATGCT
CCCTGCCCTACCAACCTGCACATTCTGCCATATCTACAGAAGGCATCCCAGAACAAGAGGACGACATGTGACTTGTATCT
GGTTACCTTAGGCAGGTCTGGAGGTACACAGCAAAGTTTCTGCCTTGGCATTATTAAGCAACCAATAGTTGCGTTAGCAC
ACAGGAATATAACCCTTGAGATTTGTTGGACCTTGTTAAGTGNAATAAACAGGAAGAAGAGCTTGTAAAATGGAACAGTT
TGTTGGTTGAGTTGTGTAAATGTAACCTTGATTGTAGCAGCTGCTTGGGTGTTGGTGTCATAGATGAGAGATTCTATATT
CAATTATTGATAAAGGCTCTACAATTTTGCGAGCCAAAATCGATTGGTTGTATTTGCAGGCCTGACTGCTAGTACCATAA
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis