Browse Element(s) Details


OsAffx.25585.1.S1_at

Description tigr:9631.m04537
TID=OsAffx.25585.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4672011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46674NANA3+26367389..26368943transposon protein, putative, unclassified
LOC_Os03g46690OsAffx.3534.1.S1_at11/113+26374411..26376763F-box domain containing protein
LOC_Os03g46710Os.50529.1.S1_x_at11/113+26382594..26387978FYVE zinc finger family protein, expressed
LOC_Os03g46710OsAffx.25584.1.S1_at8/113+26382594..26387978FYVE zinc finger family protein, expressed
LOC_Os03g46720OsAffx.25585.1.S1_at11/113+26389883..26391746F-box domain containing protein
LOC_Os03g46730Os.51760.1.S1_at11/113+26391945..26393507expressed protein
LOC_Os03g46730Os.51760.2.S1_at10/113+26391945..26393507expressed protein
LOC_Os03g46740Os.34369.1.S1_at11/113+26394467..26397972ABC transporter family protein, expressed
LOC_Os03g46750Os.16285.1.S1_a_at11/113+26398078..26400679mannosyltransferase family protein, putative, expressed
LOC_Os03g46760NANA3+26401404..26402936hypothetical protein
LOC_Os03g46770Os.46231.2.S1_x_at11/113+26409256..26410378retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46770Os.46231.1.S1_a_at11/113+26409256..26410378retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46770Os.46902.1.S1_x_at1/113+26409256..26410378retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46780OsAffx.25586.1.S1_at11/113+26411457..26413586hypothetical protein
LOC_Os03g46790OsAffx.3535.1.S1_at11/113+26415393..26416399Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25585.1.S1_at--952--6111Chr03:26390447..26390471 (25 bp)
GAGGGAATTTTCGAGCCGTTATCTA
LOC_Os03g46720
OsAffx.25585.1.S1_at--117--2411Chr03:26390413..26390437 (25 bp)
AAACAGGGCGTGTACTTTGCGTCAC
LOC_Os03g46720
OsAffx.25585.1.S1_at--898--2111Chr03:26390379..26390403 (25 bp)
ACAGGCTTCTAGTTTGGCTTCTCGA
LOC_Os03g46720
OsAffx.25585.1.S1_at--932--8291Chr03:26390364..26390388 (25 bp)
GGCTTCTCGATGAACCATGCGGTGA
LOC_Os03g46720
OsAffx.25585.1.S1_at--14--10791Chr03:26390326..26390350 (25 bp)
TTGATGCATCAAACTGACCTCGGCC
LOC_Os03g46720
OsAffx.25585.1.S1_at--578--9931Chr03:26390245..26390269 (25 bp)
TACGAGTGTAGTACTTGGCTTTTCC
LOC_Os03g46720
OsAffx.25585.1.S1_at--845--6311Chr03:26390113..26390137 (25 bp)
GATGAATACGCTCTGATCCTTGGGT
LOC_Os03g46720
OsAffx.25585.1.S1_at--636--8131Chr03:26390051..26390075 (25 bp)
GGACAGAGGGTACGCTTATCATCTA
LOC_Os03g46720
OsAffx.25585.1.S1_at--385--5091Chr03:26389994..26390018 (25 bp)
GCACCCAGTGAGTTTGCACGGTATA
LOC_Os03g46720
OsAffx.25585.1.S1_at--1101--231Chr03:26389934..26389958 (25 bp)
ATATACACCTTGCTGGATCGAAGAG
LOC_Os03g46720
OsAffx.25585.1.S1_at--981--6371Chr03:26389919..26389943 (25 bp)
GATCGAAGAGTTTCCCCAACCAGAA
LOC_Os03g46720
Target Sequence 
GAGGGAATTTTCGAGCCGTTATCTAGGAAAATCAAAACAGGGCGTGTACTTTGCGTCACTCAGCAAAGACAGGCTTCTAG
TTTGGCTTCTCGATGAACCATGCGGTGACATGAAGTGGGTCTTGATGCATCAAACTGACCTCGGCCCCAGCTTGGCAACA
AGCCATAAGCTTGATGGGCATTGGATTCTGGACGATATTAACTACGAGTGTAGTACTTGGCTTTTCCCCAAGGGAAGAAA
GCCACTGACGCTAGCGAGAGAAAATTTTGAATGGAATTCCGACGATGATGATATCGTCAACGACGCAGCCGAAGATACTG
TCAAAAGGAGGTACGATGAATACGCTCTGATCCTTGGGTTTCATCCCTACAAGGAAATTCTCTTTATCGAATCAATGGAC
AGAGGGTACGCTTATCATCTAAGCAGTTCGAAATTCGAAGAGTTGGGTAAATTGCACCCAGTGAGTTTGCACGGTATACC
TAATGAACACCTCGATGTGGAATTATCTTTTCCATATACACCTTGCTGGATCGAAGAGTTTCCCCAACCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis