Browse Element(s) Details


Os.16358.1.S1_at

Description gb:AK064362.1
DB_XREF= gi:32974380
TID=Os.16358.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16358 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033120O12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B11, full insert sequence.
FL= gb:AK103153.1 gb:AK064362.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1956011/11Zn-finger in Ran binding protein and others containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19530Os.25206.1.A1_s_at11/117+11549397..11568594Peptidase family M28 containing protein, expressed
LOC_Os07g19530Os.14681.1.A1_s_at10/117+11549397..11568594Peptidase family M28 containing protein, expressed
LOC_Os07g19530Os.25206.1.A1_x_at2/117+11549397..11568594Peptidase family M28 containing protein, expressed
LOC_Os07g19540NANA7+11581148..11581495expressed protein
LOC_Os07g19550Os.27438.2.S1_a_at4/117+11581345..11584125expressed protein
LOC_Os07g19550Os.27438.2.S1_x_at2/117+11581345..11584125expressed protein
LOC_Os07g19560Os.16358.1.S1_at11/117+11590646..11595170Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os07g19570OsAffx.5380.1.S1_at11/117+11596133..11596492hypothetical protein
LOC_Os07g19580NANA7+11597581..11599458retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19590NANA7+11599977..11602270hypothetical protein
LOC_Os07g19594OsAffx.20689.1.A1_x_at1/117+11603236..11610359retrotransposon protein, putative, unclassified
LOC_Os07g20100OsAffx.5382.1.S1_at11/117+11613954..11614678expressed protein
LOC_Os07g20110OsAffx.16339.1.S1_s_at11/117+11617440..11619279expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16358.1.S1_at--841--5511Chr07:11591479..11591503 (25 bp)
GAAAATGCACCAACTCTTCCTGGGT
LOC_Os07g19560
Os.16358.1.S1_at--593--5951Chr07:11591070..11591455 (25 bp)
GAGCAACGTGGCTCCACTGGAAGAG
LOC_Os07g19560
Os.16358.1.S1_at--148--9651Chr07:11591023..11591047 (25 bp)
TCAGGGCAGAGACCATGACTACGAT
LOC_Os07g19560
Os.16358.1.S1_at--871--2171Chr07:11590913..11590937 (25 bp)
ACACGGGCAGAGATCACAGCTATGA
LOC_Os07g19560
Os.16358.1.S1_at--1133--5431Chr07:11590871..11590895 (25 bp)
GAACCGAGCGTGACCATGATCGCTA
LOC_Os07g19560
Os.16358.1.S1_at--409--4131Chr07:11590822..11590846 (25 bp)
CGCATGTTGCATGCCGATTTTGGTT
LOC_Os07g19560
Os.16358.1.S1_at--215--10131Chr07:11590796..11590820 (25 bp)
TATGATACTTCCGTTTTGCTGCTGG
LOC_Os07g19560
Os.16358.1.S1_at--140--10711Chr07:11590781..11590805 (25 bp)
TTGCTGCTGGATAGCTATGCTGCTT
LOC_Os07g19560
Os.16358.1.S1_at--801--9111Chr07:11590764..11590788 (25 bp)
TGCTGCTTCAGCTAGTGCTGTCAGA
LOC_Os07g19560
Os.16358.1.S1_at--763--5111Chr07:11590732..11590756 (25 bp)
GCACATTATTTGTCTTGGCCTGATG
LOC_Os07g19560
Os.16358.1.S1_at--837--4471Chr07:11590715..11590739 (25 bp)
GCCTGATGGCAGTTTATATCTTTGA
LOC_Os07g19560
Target Sequence 
GAAAATGCACCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGGCTCCACTGGAAGAGAAGGCAA
GGAAAGGAGCAGAGATCAGGGCAGAGACCATGACTACGATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGGAA
GGGAGCGGCGCCGAAGTAGAGACCGTGAGAAGGAAAGGGGGAGGGACACGGGCAGAGATCACAGCTATGAGAGGAGCTGG
GAGCGAGGAACCGAGCGTGACCATGATCGCTATAGATGAATACGATGGCAGATTTTCGCATGTTGCATGCCGATTTTGGT
TTTATGATACTTCCGTTTTGCTGCTGGATAGCTATGCTGCTTCAGCTAGTGCTGTCAGATGGGTTTGCACATTATTTGTC
TTGGCCTGATGGCAGTTTATATCTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis