Browse Element(s) Details


Os.16359.1.S1_at

Description gb:AK100442.1
DB_XREF= gi:32985651
TID=Os.16359.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16359 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023089N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089N19, full insert sequence.
FL= gb:AK100442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3893011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38870OsAffx.25425.1.S1_at11/113+21554307..21555422Dof domain, zinc finger family protein, expressed
LOC_Os03g38880OsAffx.13241.1.S1_at10/113+21558907..21562361retrotransposon, putative, centromere-specific
LOC_Os03g38880Os.54774.1.S1_x_at1/113+21558907..21562361retrotransposon, putative, centromere-specific
LOC_Os03g38890NANA3+21563996..21564628retrotransposon, putative, centromere-specific
LOC_Os03g38900NANA3+21567081..21567700hypothetical protein
LOC_Os03g38920OsAffx.3439.1.S1_at8/113+21573782..21576021hypothetical protein
LOC_Os03g38930Os.16359.1.S1_at11/113+21577574..21583302expressed protein
LOC_Os03g38940Os.52221.1.S1_at11/113+21585701..21588673expressed protein
LOC_Os03g38950Os.9767.1.S1_at11/113+21589502..21591865expressed protein
LOC_Os03g38960Os.14000.1.S1_at11/113+21591963..21595861DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative, expressed
LOC_Os03g38970Os.15050.1.S1_at11/113+21602030..21614580expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16359.1.S1_at--24--9131Chr03:21578132..21578156 (25 bp)
TGCTGTGTGCAGCTCCGTGAAATAG
LOC_Os03g38930
Os.16359.1.S1_at--363--8091Chr03:21578034..21578058 (25 bp)
GGACCATCCACCTTGGTTGGAGGTA
LOC_Os03g38930
Os.16359.1.S1_at--562--6191Chr03:21578002..21578026 (25 bp)
GAGGCTAACTACAATCACGGATGTT
LOC_Os03g38930
Os.16359.1.S1_at--302--431Chr03:21577925..21577949 (25 bp)
ATCATAGCAGTCACTACCTGTTGGA
LOC_Os03g38930
Os.16359.1.S1_at--498--9211Chr03:21577898..21577922 (25 bp)
TCCAATTGATTCTTCTTGACTGCTT
LOC_Os03g38930
Os.16359.1.S1_at--1018--10091Chr03:21577818..21577842 (25 bp)
TAGGCTGATTCACTTATGGTCGATC
LOC_Os03g38930
Os.16359.1.S1_at--233--1111Chr03:21577793..21577817 (25 bp)
AGTGATCCTTTGCTCTGTTCTTACT
LOC_Os03g38930
Os.16359.1.S1_at--515--6731Chr03:21577777..21577801 (25 bp)
GTTCTTACTTCACACAGATCTCTGA
LOC_Os03g38930
Os.16359.1.S1_at--1151--1271Chr03:21577762..21577786 (25 bp)
AGATCTCTGATAAACCGTGGTCCAT
LOC_Os03g38930
Os.16359.1.S1_at--90--2631Chr03:21577750..21577774 (25 bp)
AACCGTGGTCCATTCATCTTGTGAA
LOC_Os03g38930
Os.16359.1.S1_at--935--5691Chr03:21577707..21577731 (25 bp)
GACTTTGACTCAGAACTGTTGCGCT
LOC_Os03g38930
Target Sequence 
TGCTGTGTGCAGCTCCGTGAAATAGGGCACATATATTATGACATGTACTGGGATGAGAAACCAGGCTGGAAGCCCCTTCC
TCCACAGACCAAGGTGGAGGACCATCCACCTTGGTTGGAGGTACAGGAATGAGGCTAACTACAATCACGGATGTTATTTT
TTGATTCAAAGGCAAGATAGATTCCTTACTACAGATTAACTCCTATTATCATAGCAGTCACTACCTGTTGGAAATCCAAT
TGATTCTTCTTGACTGCTTACTGTGAAGGAAATAGAAATCAAANTGGCAATCAGTTTTGTAGCTCTGATCTTTGATAGGC
TGATTCACTTATGGTCGATCAGTGATCCTTTGCTCTGTTCTTACTTCACACAGATCTCTGATAAACCGTGGTCCATTCAT
CTTGTGAAGATAATGTTGTAGATAATGACTTTGACTCAGAACTGTTGCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis