Browse Element(s) Details


Os.16401.1.S1_at

Description gb:AK109541.1
DB_XREF= gi:32994750
TID=Os.16401.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16401 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-A09, full insert sequence.
FL= gb:AK109470.1 gb:AK109541.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2138011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21310Os.56077.1.S1_x_at1/113+12169398..12177969Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os03g21320NANA3+12178858..12180320retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21330OsAffx.29607.5.S1_x_at11/113+12182858..12184921transposon protein, putative, unclassified
LOC_Os03g21330OsAffx.29607.3.S1_x_at9/113+12182858..12184921transposon protein, putative, unclassified
LOC_Os03g21340OsAffx.20730.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21340OsAffx.20733.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21340OsAffx.1197.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21340OsAffx.10020.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21340OsAffx.9790.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21350NANA3+12188447..12192447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21360Os.45173.1.S1_x_at5/113+12192836..12197637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21360OsAffx.29607.2.S1_s_at4/113+12192836..12197637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21360OsAffx.20877.1.S1_at1/113+12192836..12197637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21370Os.19817.1.S1_at10/113+12198664..12202070expressed protein
LOC_Os03g21380Os.16401.1.S2_at11/113+12202754..12204929EF hand family protein, expressed
LOC_Os03g21380Os.16401.1.S1_at11/113+12202754..12204929EF hand family protein, expressed
LOC_Os03g21390Os.22778.1.S1_at9/113+12210121..12211813expressed protein
LOC_Os03g21400OsAffx.25179.1.S1_at11/113+12213943..12216581Cytochrome P450 family protein, expressed
LOC_Os03g21419NANA3+12222613..12228685retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16401.1.S1_at--763--4911Chr03:12204565..12204589 (25 bp)
GCTTCGGCGACTTCGAGGCACTCCA
LOC_Os03g21380
Os.16401.1.S1_at--890--3931Chr03:12204359..12204383 (25 bp)
CGGAACCTCGCCACGGTGCAGGAGA
LOC_Os03g21380
Os.16401.1.S1_at--228--3771Chr03:12204212..12204236 (25 bp)
CTCTCCCCGTGTGTCATGTATGTAT
LOC_Os03g21380
Os.16401.1.S1_at--628--7471Chr03:12204204..12204228 (25 bp)
GTGTGTCATGTATGTATCCACGCAT
LOC_Os03g21380
Os.16401.1.S1_at--109--7131Chr03:12204200..12204224 (25 bp)
GTCATGTATGTATCCACGCATTGCA
LOC_Os03g21380
Os.16401.1.S1_at--1015--7151Chr03:12204171..12204195 (25 bp)
GTCTCTGCTCGGCAAATTTTTCTTG
LOC_Os03g21380
Os.16401.1.S1_at--143--2251Chr03:12204158..12204182 (25 bp)
AAATTTTTCTTGATCGTCCTGTGGA
LOC_Os03g21380
Os.16401.1.S1_at--743--10311Chr03:12204153..12204177 (25 bp)
TTTCTTGATCGTCCTGTGGAATCCT
LOC_Os03g21380
Os.16401.1.S1_at--854--6391Chr03:12204147..12204171 (25 bp)
GATCGTCCTGTGGAATCCTCCTGTT
LOC_Os03g21380
Os.16401.1.S1_at--173--9571Chr03:12204123..12204147 (25 bp)
TCTTGACTTGATCTGCTTAATTGTA
LOC_Os03g21380
Os.16401.1.S1_at--595--6411Chr03:12204114..12204138 (25 bp)
GATCTGCTTAATTGTAGCATTGAGA
LOC_Os03g21380
Target Sequence 
GCTTCGGCGACTTCGAGGCACTCCACCGCGCGCTCGGCGACGCGCTCTTCGGCCCCGTCGAGGAGGAGGAGCCCGGGAAG
CAAGGGGAGGACGACGACGAGGGCGACATGAAGGAGGCGTTCCGGGTGTTCGACGAGGACGGCGACGGCTTCATCTCCGC
CGCCGAGCTGCAGGCCGTGCTCAAGAAGCTCGGCCTCCCCGAGGCCCGGAACCTCGCCACGGTGCAGGAGATGATCTGCA
ACGTCGACCGCGACTGCGACGGCCGCGTCGACTTCGGCGAGTTCAAGTGCATGATGCAGNGGATCACCGTGTGGGGCGCT
TGACGGCGGCGAGCGAGGCCGCCGTCCTTCGTCCTCTCCCCGTGTGTCATGTATGTATCCACGCATTGCANCGTGTCTCT
GCTCGGCAAATTTTTCTTGATCGTCCTGTGGAATCCTCCTGTTCTTGACTTGATCTGCTTAATTGTAGCATTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis