Browse Element(s) Details


Os.16447.1.S1_at

Description gb:AK060491.1
DB_XREF= gi:32970509
TID=Os.16447.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16447 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013136J16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-A07, full insert sequence.
FL= gb:AK060491.1 gb:AK100007.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4466011/11Pyrimidine 5'-nucleotidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44610Os.9033.1.S1_at10/113+25070355..25078460IQ calmodulin-binding motif family protein, expressed
LOC_Os03g44620Os.46241.1.S1_s_at11/113+25081435..25085183DnaJ protein homolog, putative, expressed
LOC_Os03g44620Os.46241.2.S1_s_at11/113+25081435..25085183DnaJ protein homolog, putative, expressed
LOC_Os03g44630Os.55267.1.S1_at11/113+25085236..25085992Plastocyanin-like domain containing protein, expressed
LOC_Os03g44636OsAffx.25539.1.S1_at11/113+25089731..25090282Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g44642NANA3+25091335..25091829Zinc finger, C3HC4 type family protein
LOC_Os03g44650OsAffx.13346.1.S1_at11/113+25093821..25094795Glutaredoxin family protein
LOC_Os03g44660Os.16447.1.S1_at11/113+25096714..25100593Pyrimidine 5'-nucleotidase family protein, expressed
LOC_Os03g44670Os.7277.1.S1_s_at11/113+25101804..25105719expressed protein
LOC_Os03g44680OsAffx.25541.1.S1_at11/113+25109139..25109573hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16447.1.S1_at--55--7931Chr03:25099096..25099306 (25 bp)
GGATTGCTGTTGGATTTCTGAACAA
LOC_Os03g44660
Os.16447.1.S1_at--81--7271Chr03:25100127..25100151 (25 bp)
GTCCTTAACCAAATGATGTTTTGCT
LOC_Os03g44660
Os.16447.1.S1_at--862--4371Chr03:25100135..25100159 (25 bp)
CCAAATGATGTTTTGCTGAGCTTAG
LOC_Os03g44660
Os.16447.1.S1_at--1043--5071Chr03:25100279..25100303 (25 bp)
GCAGCCTTTTGAACCAATATCTCCT
LOC_Os03g44660
Os.16447.1.S1_at--670--11Chr03:25100467..25100491 (25 bp)
AGGTACGTAAGGTGATGAACTGAAC
LOC_Os03g44660
Os.16447.1.S1_at--713--8951Chr03:25100482..25100506 (25 bp)
TGAACTGAACCCATCAACTTCCTGA
LOC_Os03g44660
Os.16447.1.S1_at--82--3271Chr03:25100496..25100520 (25 bp)
CAACTTCCTGACCTTACTGGACGGT
LOC_Os03g44660
Os.16447.1.S1_at--352--3711Chr03:25100503..25100527 (25 bp)
CTGACCTTACTGGACGGTAACGAGA
LOC_Os03g44660
Os.16447.1.S1_at--338--7831Chr03:25100518..25100542 (25 bp)
GGTAACGAGAAATCTTTATGCCAAT
LOC_Os03g44660
Os.16447.1.S1_at--974--4371Chr03:25100537..25100561 (25 bp)
GCCAATAAAGGCATACAGTATCAAC
LOC_Os03g44660
Os.16447.1.S1_at--682--9871Chr03:25100550..25100574 (25 bp)
TACAGTATCAACTAGGTGTGGCTAT
LOC_Os03g44660
Target Sequence 
GGATTGCTGTTGGATTTCTGAACAACAACATCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTG
AATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTTAACCAAATGATGTTTTGCTGAGCTTAGN
AGCCGCATCCGCCTCCCGCTCTTGCTGAAATCTGGGAATCCTNTTCCCCACTTCACTAACCGGCNGGGTTTGTTCAATAA
GAAGCAATTTTGTACAGGCTTGACATCAAGCAAGCCAAGCAGCCTTTTGAACCAATATCTCCTTAAGCCAATCCAAACTT
GTATGAAGTCCAGAACACATTTNTGAAATGGAATTTCAAATTTGGTTTTGGTCCTCANAAAAAAAAAAAAAAAAANNNNN
ANNNNNNNANNNANNANNANNNNNNNNNNCGTTAATTAAGTAAATCTTGTGGGTAAATCAAATGTAAGGTACGTAAGGTG
ATGAACTGAACCCATCAACTTCCTGACCTTACTGGACGGTAACGAGAAATCTTTATGCCAATAAAGGCATACAGTATCAA
CTAGGTGTGGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16447.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis