Browse Element(s) Details


Os.16469.1.S1_at

Description gb:AK108323.1
DB_XREF= gi:32993532
TID=Os.16469.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16469 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-H04, full insert sequence.
FL= gb:AK108323.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0870010/11Ubiquitin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08660OsAffx.5754.1.S1_at11/118+5009170..5010130hypothetical protein
LOC_Os08g08670Os.47463.1.S1_x_at1/118+5010811..5015118transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08670Os.14491.2.S1_x_at1/118+5010811..5015118transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08680Os.46306.1.S1_x_at1/118+5018135..5021281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08690OsAffx.29106.1.S1_at11/118+5026308..5026730hypothetical protein
LOC_Os08g08700Os.16469.1.S1_at10/118+5028512..5030206Ubiquitin family protein, expressed
LOC_Os08g08710OsAffx.16899.1.S1_at10/118+5040389..5042264hypothetical protein
LOC_Os08g08720OsAffx.29169.1.S1_at8/118+5045569..5047893retrotransposon protein, putative, unclassified
LOC_Os08g08720OsAffx.29169.3.S1_at4/118+5045569..5047893retrotransposon protein, putative, unclassified
LOC_Os08g08730NANA8+5052608..5052937hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007568biological_processaging
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16469.1.S1_at--885--2531Chr08:5028762..5028786 (25 bp)
AACTCTTCTTTCTTTGGGCACTTGC
LOC_Os08g08700
Os.16469.1.S1_at--193--5111Chr08:5028745..5028769 (25 bp)
GCACTTGCTGTTGCCGGAGTTAACC
LOC_Os08g08700
Os.16469.1.S1_at--470--8811Chr08:5028737..5028761 (25 bp)
TGTTGCCGGAGTTAACCTGATCACC
LOC_Os08g08700
Os.16469.1.S1_at--254--1611Chr08:5028673..5028697 (25 bp)
AGCTGCACCGTAGTGCTCGCCATGG
LOC_Os08g08700
Os.16469.1.S1_at--431--4131Chr08:5028638..5028662 (25 bp)
CGCTCGTCGGAATTTGGCCGTGTTG
LOC_Os08g08700
Os.16469.1.S1_at--743--211Chr08:5028627..5028651 (25 bp)
ATTTGGCCGTGTTGGGTACCATCGC
LOC_Os08g08700
Os.16469.1.S1_at--900--8251Chr08:5028593..5028617 (25 bp)
GGCAGCGACCGGAGTCATGTTCAGC
LOC_Os08g08700
Os.16469.1.S1_at--803--8031Chr08:5028583..5028607 (25 bp)
GGAGTCATGTTCAGCGCCACGCAAC
LOC_Os08g08700
Os.16469.1.S1_at--229--2631Chr08:5028561..5028585 (25 bp)
AACCGGTGCTCTGCTTCTTTTTCTT
LOC_Os08g08700
Os.16469.1.S1_at--639--10371Chr08:5028543..5028567 (25 bp)
TTTTCTTCGCTCTGTTTGTTTCCTC
LOC_Os08g08700
Os.16469.1.S1_at--836--6671Chr08:5028495..5028519 (25 bp)
GTTGCTGATGGACACAACTACTCCC
NONE
Target Sequence 
AACTCTTCTTTCTTTGGGCACTTGCTGTTGCCGGAGTTAACCTGATCACCGCCGGCGTCTACNCTCNCCAGCAGAGACGA
CGTGAGCCGGAGCTGCACCGTAGTGCTCGCCATGGCGGCTGCGTTCGCTCGTCGGAATTTGGCCGTGTTGGGTACCATCG
CCGCGTCNNCGGCAGCGACCGGAGTCATGTTCAGCGCCACGCAACCGGTGCTCTGCTTCTTTTTCTTCGCTCTGTTTGTT
TCCTCTCTTTCTCTTGTCACANACNACTGTTGCTGATGGACACAACTACTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis