Browse Element(s) Details


OsAffx.29106.1.S1_at

Description tigr:9636.m00823
TID=OsAffx.29106.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0869011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08660OsAffx.5754.1.S1_at11/118+5009170..5010130hypothetical protein
LOC_Os08g08670Os.47463.1.S1_x_at1/118+5010811..5015118transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08670Os.14491.2.S1_x_at1/118+5010811..5015118transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08680Os.46306.1.S1_x_at1/118+5018135..5021281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08690OsAffx.29106.1.S1_at11/118+5026308..5026730hypothetical protein
LOC_Os08g08700Os.16469.1.S1_at10/118+5028512..5030206Ubiquitin family protein, expressed
LOC_Os08g08710OsAffx.16899.1.S1_at10/118+5040389..5042264hypothetical protein
LOC_Os08g08720OsAffx.29169.1.S1_at8/118+5045569..5047893retrotransposon protein, putative, unclassified
LOC_Os08g08720OsAffx.29169.3.S1_at4/118+5045569..5047893retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29106.1.S1_at--1062--1831Chr08:5026338..5026362 (25 bp)
ACGCTTCTTTCGGTCAGCGCGACTG
LOC_Os08g08690
OsAffx.29106.1.S1_at--443--4571Chr08:5026354..5026378 (25 bp)
GCGCGACTGTCCTCCCGGTTGGCGT
LOC_Os08g08690
OsAffx.29106.1.S1_at--53--7551Chr08:5026383..5026407 (25 bp)
GTGGCCCACGCCCAAGTCAGCTATG
LOC_Os08g08690
OsAffx.29106.1.S1_at--280--2851Chr08:5026396..5026420 (25 bp)
AAGTCAGCTATGTCCCACTCGTCGG
LOC_Os08g08690
OsAffx.29106.1.S1_at--589--1991Chr08:5026412..5026436 (25 bp)
ACTCGTCGGGCTCGTCGGTGTCCTC
LOC_Os08g08690
OsAffx.29106.1.S1_at--1117--531Chr08:5026455..5026479 (25 bp)
ATCGCCGGCGTCAAATCCAACGCGA
LOC_Os08g08690
OsAffx.29106.1.S1_at--917--8351Chr08:5026461..5026485 (25 bp)
GGCGTCAAATCCAACGCGACGGCGG
LOC_Os08g08690
OsAffx.29106.1.S1_at--738--8391Chr08:5026484..5026508 (25 bp)
GGCCGCCGGCAATCCGTCAGTATTC
LOC_Os08g08690
OsAffx.29106.1.S1_at--254--7371Chr08:5026558..5026582 (25 bp)
GTGACCTCTCCGTGGTAGGCCTCCT
LOC_Os08g08690
OsAffx.29106.1.S1_at--423--3751Chr08:5026581..5026605 (25 bp)
CTCACCGCGGCGTCTGCAGTTACGG
LOC_Os08g08690
OsAffx.29106.1.S1_at--594--8371Chr08:5026589..5026613 (25 bp)
GGCGTCTGCAGTTACGGCGCACGTC
LOC_Os08g08690
Target Sequence 
ACGCTTCTTTCGGTCAGCGCGACTGTCCTCCCGGTTGGCGTCGGTGTGGCCCACGCCCAAGTCAGCTATGTCCCACTCGT
CGGGCTCGTCGGTGTCCTCGCCGGCGCAAGCCTCATCATCGCCGGCGTCAAATCCAACGCGACGGCGGCCGCCGGCAATC
CGTCAGTATTCAGCCTCCCGGCCGCCGGTGCAATAGCTTCCTCCTACCTGCGCCGCCGCCGTGACCTCTCCGTGGTAGGC
CTCCTCACCGCGGCGTCTGCAGTTACGGCGCACGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis