Browse Element(s) Details


OsAffx.5754.1.S1_at

Description tigr:9636.m00820
TID=OsAffx.5754.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0866011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08640OsAffx.442.1.S1_x_at6/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.2.S1_s_at4/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.442.1.S1_at4/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.4.S1_x_at4/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.2.S1_x_at3/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.1.S1_x_at2/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.19066.1.S1_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.5.S1_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.24587.1.S1_x_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.1.S1_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.4.S1_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08650Os.10531.1.S1_at11/118+4992998..4995791expressed protein
LOC_Os08g08660OsAffx.5754.1.S1_at11/118+5009170..5010130hypothetical protein
LOC_Os08g08670Os.47463.1.S1_x_at1/118+5010811..5015118transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08670Os.14491.2.S1_x_at1/118+5010811..5015118transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08680Os.46306.1.S1_x_at1/118+5018135..5021281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08690OsAffx.29106.1.S1_at11/118+5026308..5026730hypothetical protein
LOC_Os08g08700Os.16469.1.S1_at10/118+5028512..5030206Ubiquitin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5754.1.S1_at--1027--3531Chr08:5010068..5010092 (25 bp)
CATCGAGGGTTCTGCTTGCCGAGAT
LOC_Os08g08660
OsAffx.5754.1.S1_at--426--4511Chr08:5010051..5010075 (25 bp)
GCCGAGATGTGCACACCTGGGTGAA
LOC_Os08g08660
OsAffx.5754.1.S1_at--855--5251Chr08:5010011..5010035 (25 bp)
GAATCCCTTTGTCGGTGTGACTGGC
LOC_Os08g08660
OsAffx.5754.1.S1_at--1070--991Chr08:5009441..5009737 (25 bp)
AGGATCTCCTCCTGAGCAGTTTGTT
LOC_Os08g08660
OsAffx.5754.1.S1_at--287--10811Chr08:5009421..5009445 (25 bp)
TTGTTTGCCGGCATGGTGACCAGCA
LOC_Os08g08660
OsAffx.5754.1.S1_at--785--1531Chr08:5009400..5009424 (25 bp)
AGCATTGGCAAGGATTCCACCTCCG
LOC_Os08g08660
OsAffx.5754.1.S1_at--262--7971Chr08:5009342..5009366 (25 bp)
GGATCGAGCTAGTCCGGCGAACCAA
LOC_Os08g08660
OsAffx.5754.1.S1_at--138--4091Chr08:5009325..5009349 (25 bp)
CGAACCAATGCCCTTGTGACTAGAT
LOC_Os08g08660
OsAffx.5754.1.S1_at--889--9731Chr08:5009301..5009325 (25 bp)
TCAATCTCCTCTAATCTCGAATCGA
LOC_Os08g08660
OsAffx.5754.1.S1_at--354--5251Chr08:5009283..5009307 (25 bp)
GAATCGAGCTCCTCAGACCTTGAAA
LOC_Os08g08660
OsAffx.5754.1.S1_at--323--6731Chr08:5009254..5009278 (25 bp)
GTTCTTGCCACAGGGATCAAACGCC
LOC_Os08g08660
Target Sequence 
CATCGAGGGTTCTGCTTGCCGAGATGTGCACACCTGGGTGAATGTGCGGCCGGAACCGAATCCCTTTGTCGGTGTGACTG
GCACAGAGCCACCATCGCCGACCTCTATTCACCGGTGGGCAGTCCATGGCGAAGTCCTATGCAGTTCCAAACTCCAATAT
CAGGATACCGAGGATCTCCTCCTGAGCAGTTTGTTTGCCGGCATGGTGACCAGCATTGGCAAGGATTCCACCTCCGGGAC
AGCTCCCCCAGGTGAGTCCGAGCCTAGGCGGATCGAGCTAGTCCGGCGAACCAATGCCCTTGTGACTAGATCAATCTCCT
CTAATCTCGAATCGAGCTCCTCAGACCTTGAAATCAAGTTCTTGCCACAGGGATCAAACGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis