Browse Element(s) Details

Os.10531.1.S1_at

Description

gb:AK059491.1
DB_XREF= gi:32969509
TID=Os.10531.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10531 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023072O13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-H01, full insert sequence.
FL= gb:AK099155.1 gb:AK059491.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os08g08650	11/11	expressed protein
LOC_Os08g08360	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os08g08600	OsAffx.5752.1.S1_x_at	11/11	8	+	4969829..4972830	hypothetical protein
LOC_Os08g08600	OsAffx.5752.1.S1_at	10/11	8	+	4969829..4972830	hypothetical protein
LOC_Os08g08610	OsAffx.20387.1.S1_x_at	1/11	8	+	4973788..4976378	transposon protein, putative, unclassified
LOC_Os08g08620	NA	NA	8	+	4976632..4978593	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08630	NA	NA	8	+	4981172..4981579	hypothetical protein
LOC_Os08g08640	OsAffx.442.1.S1_x_at	6/11	8	+	4984481..4990015	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640	OsAffx.30226.2.S1_s_at	4/11	8	+	4984481..4990015	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640	OsAffx.442.1.S1_at	4/11	8	+	4984481..4990015	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640	OsAffx.30226.4.S1_x_at	4/11	8	+	4984481..4990015	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640	OsAffx.30226.2.S1_x_at	3/11	8	+	4984481..4990015	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640	OsAffx.30226.1.S1_x_at	2/11	8	+	4984481..4990015	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640	OsAffx.19066.1.S1_at	1/11	8	+	4984481..4990015	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640	OsAffx.30226.5.S1_at	1/11	8	+	4984481..4990015	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640	OsAffx.24587.1.S1_x_at	1/11	8	+	4984481..4990015	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640	OsAffx.30226.1.S1_at	1/11	8	+	4984481..4990015	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640	OsAffx.30226.4.S1_at	1/11	8	+	4984481..4990015	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08650	Os.10531.1.S1_at	11/11	8	+	4992998..4995791	expressed protein
LOC_Os08g08660	OsAffx.5754.1.S1_at	11/11	8	+	5009170..5010130	hypothetical protein
LOC_Os08g08670	Os.47463.1.S1_x_at	1/11	8	+	5010811..5015118	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08670	Os.14491.2.S1_x_at	1/11	8	+	5010811..5015118	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08680	Os.46306.1.S1_x_at	1/11	8	+	5018135..5021281	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10531.1.S1_at--525--689	2	Chr08:4813686..4813710 (25 bp)	GTATCCCTGCGAGCATTAGGCCACA	LOC_Os08g08360
Os.10531.1.S1_at--1028--1043	2	Chr08:4813701..4813725 (25 bp)	TTAGGCCACAAGTCAAGACCTGGTA	LOC_Os08g08360
Os.10531.1.S1_at--999--137	2	Chr08:4813716..4813740 (25 bp)	AGACCTGGTATGACCGGCATTTTCC	LOC_Os08g08360
Os.10531.1.S1_at--773--231	2	Chr08:4813784..4813808 (25 bp)	AAAGAACCTGCTAGCCTTAGGGCAC	LOC_Os08g08360
Os.10531.1.S1_at--1090--555	2	Chr08:4813889..4813913 (25 bp)	GAAAGGATACTCAGGCAGCTTCCGC	LOC_Os08g08360
Os.10531.1.S1_at--725--1063	2	Chr08:4813908..4813932 (25 bp)	TTCCGCCATACCGTGAACTTAAGCA	LOC_Os08g08360
Os.10531.1.S1_at--209--793	2	Chr08:4814121..4814145 (25 bp)	GGATTGCAATAGCTTCTGTTCTGAG	LOC_Os08g08360
Os.10531.1.S1_at--566--669	2	Chr08:4814138..4814162 (25 bp)	GTTCTGAGCGCCATTTTCATAACGG	LOC_Os08g08360
Os.10531.1.S1_at--672--631	2	Chr08:4814208..4814232 (25 bp)	GATGACGCTGCAATTATCAATTCGT	LOC_Os08g08360
Os.10531.1.S1_at--852--881	2	Chr08:4814262..4814286 (25 bp)	TGTTGATTCATTTTGCTGTACGCTA	LOC_Os08g08360
Os.10531.1.S1_at--205--313	2	Chr08:4814286..4814310 (25 bp)	AATTTGCCTGCTACTGTGTGAGACT	LOC_Os08g08360

Target Sequence

GTATCCCTGCGAGCATTAGGCCACAAGTCAAGACCTGGTATGACCGGCATTTTCCTCACGCAGAACCTACTGTGAACGGG
GAGTCTGGTATCAGCAACAAAGAACCTGCTAGCCTTAGGGCACAAGTCGAGGAGAAGAAAATCGAGCTGTTCCATCTGCT
ATCGCAGCTGNAATATAGTGGTGAGAACTCCAACCTGGAGGACGAAAGGATACTCAGGCAGCTTCCGCCATACCGTGAAC
TTAAGCACCTAGTTAATGGTTACGGAATAAAGCTAGTCGTGAAACGGATTGCAATAGCTTCTGTTCTGAGCGCCATTTTC
ATAACGGCGATGGTGAAGATGTGAATCCACAAAGTTTGGTAGCTGGAAGCAGGATGACGCTGCAATTATCAATTCGTATA
AGTCTTTCTAGGGACTCAAGTGCTAGTGTTGATTCATTTTGCTGTACGCTAATTTGCCTGCTACTGTGTGAGACT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis