Browse Element(s) Details


Os.16502.1.S1_at

Description gb:AK105395.1
DB_XREF= gi:32990604
TID=Os.16502.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16502 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B08, full insert sequence.
FL= gb:AK103796.1 gb:AK105395.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0838011/11expressed protein
LOC_Os08g377301/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08350Os.8495.1.S1_at11/112+4432872..4438113expressed protein
LOC_Os02g08360OsAffx.24164.1.S1_x_at11/112+4440199..4448745RNA recognition motif, putative, expressed
LOC_Os02g08370Os.18975.1.S1_at11/112+4454853..4457731Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g08380Os.16502.1.S1_at11/112+4460297..4463658expressed protein
LOC_Os02g08390OsAffx.25936.1.S1_s_at8/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.7.S1_s_at7/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.2.S1_x_at4/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.1.S1_at2/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.5.S1_x_at1/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08400OsAffx.11941.1.S1_x_at11/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.11941.1.S1_at11/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.16049.1.S1_at1/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.16049.1.S1_x_at1/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.15919.1.S1_x_at1/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08410Os.54001.1.S1_at11/112+4486528..4489406chorismate mutase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16502.1.S1_at--967--3211Chr02:4462030..4462054 (25 bp)
CAAGTTGAGGCTGTCCGGGTGCAAA
LOC_Os02g08380
Os.16502.1.S1_at--911--8071Chr02:4462056..4462162 (25 bp)
GGAGCTTGCAGCGACTGAGATCGAT
LOC_Os02g08380
Os.16502.1.S1_at--11--10571Chr02:4462956..4462980 (25 bp)
TTCTGGGAACCAGCAGCCTGTAAGA
LOC_Os02g08380
Os.16502.1.S1_at--935--6051Chr02:4462979..4463003 (25 bp)
GAGTTGAAATCACCGAAGCTGCAAT
LOC_Os02g08380
Os.16502.1.S1_at--605--10311Chr02:4463212..4463236 (25 bp)
TTTCTGAGCTGGTGAACGACGCCTA
LOC_Os02g08380
Os.16502.1.S1_at--689--5452Chr02:4463225..4463249 (25 bp)
GAACGACGCCTACAAGGATGCACAT
LOC_Os02g08380
Os.16502.1.S1_at--776--6231Chr02:4463361..4463385 (25 bp)
GATGGCTGATCTGGCACAGAGCTTA
LOC_Os02g08380
Os.16502.1.S1_at--1047--5911Chr02:4463379..4463403 (25 bp)
GAGCTTAGGAATGCCAGCAGGCCTT
LOC_Os02g08380
Os.16502.1.S1_at--422--111Chr02:4463506..4463530 (25 bp)
ATTCGTGGCGAGTACTGTTAGCTGT
LOC_Os02g08380
Os.16502.1.S1_at--902--6791Chr02:4463562..4463586 (25 bp)
GTTTTCCTTAATCATTGGCACACCA
LOC_Os02g08380
Os.16502.1.S1_at--787--5791Chr02:4463596..4463620 (25 bp)
GACGCAAGTGTGCTGTTTTACAACT
LOC_Os02g08380
Target Sequence 
CAAGTTGAGGCTGTCCGGGTGCAAAAGGAGCTTGCAGCGACTGAGATCGATGGTTACTGTGAAGGGGAACTAATCAAGGT
AACACTTTCTGGGAACCAGCAGCCTGTAAGAGTTGAAATCACCGAAGCTGCAATGGAAGTGGGTGCTGAAAAACTTTCTG
AGCTGGTGAACGACGCCTACAAGGATGCACATCAGAGGAGTGTCCAGGCAATGAAGGAGAGGATGGCTGATCTGGCACAG
AGCTTAGGAATGCCAGCAGGCCTTGGTGATGGACTCAAGTGATAGTGTGGTACATGAATGCTTTTCAATAAAAAAAAAAG
TGTATCTCAATTTTGTATACTAGCTGTATTGAGTCATCAGTTTAAAATTCGTGGCGAGTACTGTTAGCTGTGTAAGAACT
GTAATCGAGAACATCTGATCCTGTTTTCCTTAATCATTGGCACACCATAATGCATTGACGCAAGTGTGCTGTTTTACAAC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis