Browse Element(s) Details


Os.16515.1.S1_x_at

Description gb:BI803155
DB_XREF= gi:16575859
DB_XREF=H102D12
CLONE=H102D12
TID=Os.16515.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.16515 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g556902/11Glutelin type-A 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55630OsAffx.11615.1.S1_at11/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.8013.1.S1_at3/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.22346.1.S1_x_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630OsAffx.27508.71.S1_s_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.12807.2.S1_x_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55640NANA1+32384003..32384981Seven in absentia protein family protein
LOC_Os01g55650Os.13102.1.S1_at11/111+32384248..32389677patatin, putative, expressed
LOC_Os01g55650Os.13102.1.S2_at5/111+32384248..32389677patatin, putative, expressed
LOC_Os01g55660NANA1+32392337..32396694retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g55670NANA1+32397767..32398923expressed protein
LOC_Os01g55690Os.22346.1.S1_x_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690OsAffx.27508.71.S1_s_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.22346.2.S1_x_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.12807.2.S1_x_at4/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.16515.1.S1_x_at2/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55700NANA1+32406246..32409194NLI interacting factor-like phosphatase family protein
LOC_Os01g55710Os.54916.1.S1_at1/111+32409864..32410541hypothetical protein
LOC_Os01g55720Os.16746.1.S1_at11/111+32415117..32415884expressed protein
LOC_Os01g55720Os.16746.1.S1_x_at11/111+32415117..32415884expressed protein
LOC_Os01g55730Os.10016.1.S1_a_at10/111+32418474..32420989expressed protein
LOC_Os01g55740Os.42060.1.S1_at10/111+32421251..32425563Rhomboid family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0042735cellular_componentprotein body
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16515.1.S1_x_at--95--5231NONE
GAATATCCTCTTAGTTCGGCTTCGG
NONE
Os.16515.1.S1_x_at--627--3091NONE
AATATCCTCTTAGTTCGGCTTCGGA
NONE
Os.16515.1.S1_x_at--577--251NONE
ATATCCTCTTAGTTCGGCTTCGGAT
NONE
Os.16515.1.S1_x_at--178--10151NONE
TATCCTCTTAGTTCGGCTTCGGATA
NONE
Os.16515.1.S1_x_at--210--571NONE
ATCCTCTTAGTTCGGCTTCGGATAA
NONE
Os.16515.1.S1_x_at--762--9251NONE
TCCTCTTAGTTCGGCTTCGGATAAA
NONE
Os.16515.1.S1_x_at--927--4191NONE
CCTCTTAGTTCGGCTTCGGATAAAG
NONE
Os.16515.1.S1_x_at--296--3751NONE
CTCTTAGTTCGGCTTCGGATAAAGA
NONE
Os.16515.1.S1_x_at--355--9531NONE
TCTTAGTTCGGCTTCGGATAAAGAA
NONE
Os.16515.1.S1_x_at--14--9951Chr01:32405392..32405414 (22 bp)
TTCGGCTTCGGATAAAGAATAACCT
LOC_Os01g55690
Os.16515.1.S1_x_at--85--9451Chr01:32405392..32405414 (22 bp)
TCGGCTTCGGATAAAGAATAACCTT
LOC_Os01g55690
Target Sequence 
GAATATCCTCTTAGTTCGGCTTCGGATAAAGAATAACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16515.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis