Browse Element(s) Details


Os.16540.1.S1_at

Description gb:AK060082.1
DB_XREF= gi:32970100
TID=Os.16540.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1714_H10.46 (OJ1714_H10.46), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D11, full insert sequence.
FL= gb:AK060082.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0683011/11alpha/beta hydrolase fold family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06770OsAffx.28313.2.S1_s_at11/117+3305087..3306718expressed protein
LOC_Os07g06780NANA7+3307407..3311111transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g06790OsAffx.28314.1.S1_x_at11/117+3311764..3312297VQ motif family protein, expressed
LOC_Os07g06800OsAffx.16129.1.S1_at10/117+3314786..33164703-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os07g06810OsAffx.22471.1.S1_x_at11/117+3317638..3320290hypothetical protein
LOC_Os07g06820Os.17949.1.S1_a_at11/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_x_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820Os.31112.3.S1_at10/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06820OsAffx.18607.1.S1_x_at3/117+3322061..3328234RIO1 family protein, expressed
LOC_Os07g06830Os.16540.1.S1_at11/117+3331186..3332575alpha/beta hydrolase fold family protein, putative, expressed
LOC_Os07g06840Os.17690.1.S1_at11/117+3340497..3341896PrMC3, putative, expressed
LOC_Os07g06850Os.27810.1.S1_at11/117+3343080..3344851PrMC3, putative, expressed
LOC_Os07g06860Os.28983.1.S1_at11/117+3349432..3350972PrMC3, putative, expressed
LOC_Os07g06870OsAffx.28315.1.S1_at11/117+3356244..3357843hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16540.1.S1_at--475--3751Chr07:3331706..3331730 (25 bp)
CTCACCGCCGAGATGAGCGACAGGT
LOC_Os07g06830
Os.16540.1.S1_at--349--1311Chr07:3331696..3331720 (25 bp)
AGATGAGCGACAGGTACGCGCGCCT
LOC_Os07g06830
Os.16540.1.S1_at--714--4091Chr07:3331654..3331678 (25 bp)
CGACGAGGGACTACCCGGTGCTGAA
LOC_Os07g06830
Os.16540.1.S1_at--961--3931Chr07:3331567..3331591 (25 bp)
CGGCGGAGCACGACATCCTCAGGGA
LOC_Os07g06830
Os.16540.1.S1_at--671--2091Chr07:3331555..3331579 (25 bp)
ACATCCTCAGGGACCGGAACGAGCA
LOC_Os07g06830
Os.16540.1.S1_at--988--7211Chr07:3331391..3331415 (25 bp)
GTCGAGCACATGGACTCGGAGTAGC
LOC_Os07g06830
Os.16540.1.S1_at--166--2851Chr07:3331322..3331346 (25 bp)
AAGTGATTTAGACTTTTTCTACATA
LOC_Os07g06830
Os.16540.1.S1_at--876--1331Chr07:3331285..3331309 (25 bp)
AGAGCGATTTGTATTTGTTAGGTGT
LOC_Os07g06830
Os.16540.1.S1_at--301--6791Chr07:3331269..3331293 (25 bp)
GTTAGGTGTGTTTTGATCTTATCTT
LOC_Os07g06830
Os.16540.1.S1_at--97--5251Chr07:3331208..3331232 (25 bp)
GAATCAATAATGGAATGCCACATGG
LOC_Os07g06830
Os.16540.1.S1_at--115--9211Chr07:3331193..3331217 (25 bp)
TGCCACATGGATGGCAATGCTTCTT
LOC_Os07g06830
Target Sequence 
CTCACCGCCGAGATGAGCGACAGGTACGCGCGCCTCATCCTGCCGGGCGGCGCGACGAGGGACTACCCGGTGCTGAACCC
CGCCGGGCCGGAGGCGCCGGGGCTGGAGGCGGTGGCGATGGCGCCGTCGCTCGTCGTGGCGGCGGAGCACGACATCCTCA
GGGACCGGAACGAGCACTACGCGCGGCGGATGAGGGAGGAGTGGGGGAAGGAGGTGGCGTTCGTCGAGTTCGCCGGCGAG
CAGCACGGCTTCTTCGAGGTGGATCCGTGGTCGGAGCGCGCCGACGAGCTCGTCCGCCTCATCCGCAGCTTCGTCGTCGA
GCACATGGACTCGGAGTAGCNAAGCACTAGCTAGCTACATGATCANAAGATTAGTCAATTATTAAAAGTGATTTAGACTT
TTTCTACATAATTGATGAGTTGAGAGCGATTTGTATTTGTTAGGTGTGTTTTGATCTTATCTTAGTTATTATTGATATGT
TTCTTGGTAATTTGAGAATGAATCAATAATGGAATGCCACATGGATGGCAATGCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis