Browse Element(s) Details


Os.16625.1.S1_at

Description gb:AK102142.1
DB_XREF= gi:32987351
TID=Os.16625.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033085M22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033085M22, full insert sequence.
FL= gb:AK102142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4087011/11Phosphatidylinositol N-acetylglucosaminyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40840Os.53830.1.S1_at11/112+24743582..24748891GMC oxidoreductase family protein, expressed
LOC_Os02g40850Os.40855.5.S1_x_at11/112+24756878..24759423hypothetical protein
LOC_Os02g40850Os.40360.1.S1_at9/112+24756878..24759423hypothetical protein
LOC_Os02g40850Os.40360.1.S1_x_at6/112+24756878..24759423hypothetical protein
LOC_Os02g40860Os.27664.1.S1_at11/112+24760940..24766881Casein kinase I, epsilon isoform, putative, expressed
LOC_Os02g40870Os.16625.1.S1_at11/112+24767680..24769171Phosphatidylinositol N-acetylglucosaminyltransferase family protein, expressed
LOC_Os02g40880OsAffx.2932.1.S1_s_at11/112+24771861..2477376860 ribosomal protein L14, putative, expressed
LOC_Os02g40880Os.7150.1.S1_at1/112+24771861..2477376860 ribosomal protein L14, putative, expressed
LOC_Os02g40890Os.7522.1.S1_at10/112+24774059..24776899expressed protein
LOC_Os02g40900Os.24611.1.S1_at11/112+24777346..24780675expressed protein
LOC_Os02g40910OsAffx.12437.1.S1_at11/112+24783662..24784196hypothetical protein
LOC_Os02g40920Os.26886.1.S1_x_at7/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40920Os.26886.3.S1_x_at4/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40920OsAffx.16244.1.S1_x_at1/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006506biological_processGPI anchor biosynthesis
GO:0009846biological_processpollen germination
GO:0009860biological_processpollen tube growth
GO:0000506cellular_componentglycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex
GO:0016020cellular_componentmembrane
GO:0016740molecular_functiontransferase activity
GO:0017176molecular_functionphosphatidylinositol N-acetylglucosaminyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16625.1.S1_at--176--3831Chr02:24768241..24768265 (25 bp)
CTGCCATCTAGGCTGCATGTCTTTG
LOC_Os02g40870
Os.16625.1.S1_at--591--7151Chr02:24768223..24768247 (25 bp)
GTCTTTGCAATCATGCTATTCTCCT
LOC_Os02g40870
Os.16625.1.S1_at--306--3691Chr02:24768208..24768232 (25 bp)
CTATTCTCCTTGCAGATCTTCCTGT
LOC_Os02g40870
Os.16625.1.S1_at--409--6731Chr02:24768152..24768176 (25 bp)
GTTCTCTCTTAGACTTCATCTGCTC
LOC_Os02g40870
Os.16625.1.S1_at--862--9091Chr02:24768132..24768156 (25 bp)
TGCTCTTCTCCTTTGCTCTGATGAT
LOC_Os02g40870
Os.16625.1.S1_at--548--711Chr02:24768112..24768136 (25 bp)
ATGATCATGACCCTAGGCGTCACAT
LOC_Os02g40870
Os.16625.1.S1_at--797--891Chr02:24768098..24768122 (25 bp)
AGGCGTCACATACCAATTGCATCAC
LOC_Os02g40870
Os.16625.1.S1_at--353--71Chr02:24768083..24768107 (25 bp)
ATTGCATCACATGTTCTTCATCCTA
LOC_Os02g40870
Os.16625.1.S1_at--646--9151Chr02:24768025..24768049 (25 bp)
TGCCCTTACTGGCTTATAAGAATTC
LOC_Os02g40870
Os.16625.1.S1_at--154--10071Chr02:24767866..24767890 (25 bp)
TAGTCTTATTATTCTGGAGCAATTT
LOC_Os02g40870
Os.16625.1.S1_at--864--4871Chr02:24767827..24767851 (25 bp)
GCTTTTCTTAACATATACTACCTTC
LOC_Os02g40870
Target Sequence 
CTGCCATCTAGGCTGCATGTCTTTGCAATCATGCTATTCTCCTTGCAGATCTTCCTGTTTGTGCCCCTCGTCGCGTTTTG
TNTTAAGAAGTTCTCTCTTAGACTTCATCTGCTCTTCTCCTTTGCTCTGATGATCATGACCCTAGGCGTCACATACCAAT
TGCATCACATGTTCTTCATCCTACNGCTGGCACTGCTTGNTNTTATCTCAATTGNTTGCCCTTACTGGCTTATAAGAATT
CAGGAATACAAGTTTGAGATCAATGGTCCCTGGGATGAAGCTAAACTCTGCTTTGATATAACTGAATAACAGAGGAAAGT
GCATATGCAGAATTTTGGTTTCAATGNTCATTATCTATAANTTGATGTATTACCATTAGTCTTATTATTCTGGAGCAATT
TATGTGCNATGNATATGCTTTTCTTAACATATACTACCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis