Browse Element(s) Details


Os.16645.1.A1_at

Description gb:CB628276
DB_XREF= gi:29623265
DB_XREF=OSIIEb03L21.r
CLONE=OSIIEb03L21
TID=Os.16645.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.16645 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_174599.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1064011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10620NANA12+5661215..5661832hypothetical protein
LOC_Os12g10630OsAffx.31685.1.S1_at11/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed
LOC_Os12g10630OsAffx.24770.1.S1_x_at1/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed
LOC_Os12g10640Os.16645.1.A1_at11/1112+5683582..5688883expressed protein
LOC_Os12g10650OsAffx.31686.1.S1_s_at11/1112+5691948..5695222expressed protein
LOC_Os12g10660Os.52538.1.S1_at11/1112+5698772..5701407Salt tolerance-like protein At1g78600, putative, expressed
LOC_Os12g10660Os.52538.1.S1_s_at11/1112+5698772..5701407Salt tolerance-like protein At1g78600, putative, expressed
LOC_Os12g10670OsAffx.7551.1.S1_at11/1112+5702034..5707190ATPase, AAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16645.1.A1_at--1038--2891Chr12:5684647..5684671 (25 bp)
AAGGAGTGTGGACATGTTACTTCAT
LOC_Os12g10640
Os.16645.1.A1_at--776--10591Chr12:5684197..5684221 (25 bp)
TTCTGAATATGAGCTTACCTGTTAC
LOC_Os12g10640
Os.16645.1.A1_at--596--10311Chr12:5684165..5684189 (25 bp)
TTTATCAAACTGCATGTTCCCGTCC
LOC_Os12g10640
Os.16645.1.A1_at--317--6371Chr12:5684135..5684159 (25 bp)
GATCCCTGTGGACTAATGTATACTT
LOC_Os12g10640
Os.16645.1.A1_at--675--6891Chr12:5684118..5684142 (25 bp)
GTATACTTATTCAGCGTGTTGTTGG
LOC_Os12g10640
Os.16645.1.A1_at--114--3711Chr12:5684058..5684082 (25 bp)
CTACTCCGGCAAAGGAACTGGTGCT
LOC_Os12g10640
Os.16645.1.A1_at--1102--5531Chr12:5683825..5683849 (25 bp)
GAAACATCCTGCATAGGTGCCTCTG
LOC_Os12g10640
Os.16645.1.A1_at--574--7771Chr12:5683810..5683834 (25 bp)
GGTGCCTCTGGTGAACATTTGGACT
LOC_Os12g10640
Os.16645.1.A1_at--88--10011Chr12:5683793..5683817 (25 bp)
TTTGGACTAACTATCCCGGAATTGT
LOC_Os12g10640
Os.16645.1.A1_at--47--6991Chr12:5683770..5683794 (25 bp)
GTACCTTTTGTGTTTCAATGGCAGT
LOC_Os12g10640
Os.16645.1.A1_at--863--9571Chr12:5683745..5683769 (25 bp)
TCATCAATTGATTCCTAGTTTCCAG
LOC_Os12g10640
Target Sequence 
AAGGAGTGTGGACATGTTACTTCATGGCAAGAAACCACTTGTTGAGGTCAGGAAAAGGGATAACAAGTTTCAGGTTGTCA
TTGAAAGATGGGCAACGTATGATGGAGATGGACTCTGAAATTCTGAATATGAGCTTACCTGTTACAGNTGCTTTTATCAA
ACTGCATGTTCCCGTCCCTCAGGATCCCTGTGGACTAATGTATACTTATTCAGCGTGTTGTTGGTATTGATTCCAAAGAC
TTGTCAAGTTATAGTACTGCTACTCCGGCAAAGGAACTGGTGCTGTTCATTGAGAAAATGAAGTGAAACATCCTGCATAG
GTGCCTCTGGTGAACATTTGGACTAACTATCCCGGAATTGTACCTTTTGTGTTTCAATGGCAGTTCATCAATTGATTCCT
AGTTTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16645.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis