Browse Element(s) Details


OsAffx.31686.1.S1_s_at

Description tigr:9640.m01005
TID=OsAffx.31686.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1065011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10630OsAffx.31685.1.S1_at11/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed
LOC_Os12g10630OsAffx.24770.1.S1_x_at1/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed
LOC_Os12g10640Os.16645.1.A1_at11/1112+5683582..5688883expressed protein
LOC_Os12g10650OsAffx.31686.1.S1_s_at11/1112+5691948..5695222expressed protein
LOC_Os12g10660Os.52538.1.S1_at11/1112+5698772..5701407Salt tolerance-like protein At1g78600, putative, expressed
LOC_Os12g10660Os.52538.1.S1_s_at11/1112+5698772..5701407Salt tolerance-like protein At1g78600, putative, expressed
LOC_Os12g10670OsAffx.7551.1.S1_at11/1112+5702034..5707190ATPase, AAA family protein, expressed
LOC_Os12g10680NANA12+5715536..5719180retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31686.1.S1_s_at--574--2431Chr12:5694291..5694315 (25 bp)
AAAAGCATCCAGATTCACTCTACCA
LOC_Os12g10650
OsAffx.31686.1.S1_s_at--856--10511Chr12:5694304..5694328 (25 bp)
TTCACTCTACCATGACGCAATCAAG
LOC_Os12g10650
OsAffx.31686.1.S1_s_at--453--8851Chr12:5694523..5694547 (25 bp)
TGATCCACCGCCAGCACGAGTTTTT
LOC_Os12g10650
OsAffx.31686.1.S1_s_at--854--10371Chr12:5694544..5694568 (25 bp)
TTTTGCTTGGCGTGTCTTAGAATTG
LOC_Os12g10650
OsAffx.31686.1.S1_s_at--1161--5891Chr12:5694821..5694845 (25 bp)
GAGCTGAAAGAAATCGCGCGCATCG
LOC_Os12g10650
OsAffx.31686.1.S1_s_at--924--5571Chr12:5694830..5694854 (25 bp)
GAAATCGCGCGCATCGAAGGAAAAA
LOC_Os12g10650
OsAffx.31686.1.S1_s_at--1113--291Chr12:5694871..5694895 (25 bp)
ATACCCAAGCGCCATCAAAGAAATA
LOC_Os12g10650
OsAffx.31686.1.S1_s_at--135--7391Chr12:5694917..5694941 (25 bp)
GTGAGAGAGCGTTTCCATAACCCCA
LOC_Os12g10650
OsAffx.31686.1.S1_s_at--62--10231Chr12:5694928..5694952 (25 bp)
TTTCCATAACCCCAAGATACTTGAG
LOC_Os12g10650
OsAffx.31686.1.S1_s_at--489--5031Chr12:5695018..5695042 (25 bp)
GCAGTAGCTGGTATATTGCCATACT
LOC_Os12g10650
OsAffx.31686.1.S1_s_at--126--10691Chr12:5695033..5695057 (25 bp)
TTGCCATACTGTTGGTCAACTAGGT
LOC_Os12g10650
Target Sequence 
AAAAGCATCCAGATTCACTCTACCATGACGCAATCAAGATAAGCGGGTTTGATCCACCGCCAGCACGAGTTTTTGCTTGG
CGTGTCTTAGAATTGAAAAAGGACGGAGTCAATGAAGATGATGCAATGGCTGTAGCAGATATGGAGTATGCAGCAGAGAA
GAAAGCCAAGAAGAAAGCATACAAGGAGCTGAAAGAAATCGCGCGCATCGAAGGAAAAAGGCCACCCCCGAATCCATACC
CAAGCGCCATCAAAGAAATACAGGCAGAGGAAAAGAAGTATGTGAGAGAGCGTTTCCATAACCCCAAGATACTTGAGATT
GTTAAGAAGATGAAAGAGGATAAGGAGTTATTTTTTAAAGATAGAGAAGCATCCAGGGCTGGGCAGTAGCTGGTATATTG
CCATACTGTTGGTCAACTAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31686.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis