Browse Element(s) Details


Os.52538.1.S1_s_at

Description gb:AK067820.1
DB_XREF= gi:32977838
TID=Os.52538.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52538 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013117D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013117D12, full insert sequence.
FL= gb:AK067820.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1066011/11Salt tolerance-like protein At1g78600, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10630OsAffx.31685.1.S1_at11/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed
LOC_Os12g10630OsAffx.24770.1.S1_x_at1/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed
LOC_Os12g10640Os.16645.1.A1_at11/1112+5683582..5688883expressed protein
LOC_Os12g10650OsAffx.31686.1.S1_s_at11/1112+5691948..5695222expressed protein
LOC_Os12g10660Os.52538.1.S1_at11/1112+5698772..5701407Salt tolerance-like protein At1g78600, putative, expressed
LOC_Os12g10660Os.52538.1.S1_s_at11/1112+5698772..5701407Salt tolerance-like protein At1g78600, putative, expressed
LOC_Os12g10670OsAffx.7551.1.S1_at11/1112+5702034..5707190ATPase, AAA family protein, expressed
LOC_Os12g10680NANA12+5715536..5719180retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009651biological_processresponse to salt stress
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52538.1.S1_s_at--355--4491Chr12:5701173..5701197 (25 bp)
GCCGGAGCAGCAGTGGCCGTGGAGT
LOC_Os12g10660
Os.52538.1.S1_s_at--312--3991Chr12:5701190..5701214 (25 bp)
CGTGGAGTGACGTCTTCGCCGCCGA
LOC_Os12g10660
Os.52538.1.S1_s_at--57--1891Chr12:5701220..5701244 (25 bp)
ACGATGACGTCAGCGCCGCCATGGA
LOC_Os12g10660
Os.52538.1.S1_s_at--1025--9651Chr12:5701229..5701253 (25 bp)
TCAGCGCCGCCATGGAGCAGTGCTA
LOC_Os12g10660
Os.52538.1.S1_s_at--729--5931Chr12:5701243..5701267 (25 bp)
GAGCAGTGCTACTATCATGGCATCT
LOC_Os12g10660
Os.52538.1.S1_s_at--1129--7311Chr12:5701248..5701272 (25 bp)
GTGCTACTATCATGGCATCTCTGAA
LOC_Os12g10660
Os.52538.1.S1_s_at--864--10151Chr12:5701255..5701279 (25 bp)
TATCATGGCATCTCTGAACCTCACT
LOC_Os12g10660
Os.52538.1.S1_s_at--28--3391Chr12:5701284..5701308 (25 bp)
CAGCCTCACTGGATGATGGCAGCTT
LOC_Os12g10660
Os.52538.1.S1_s_at--82--6311Chr12:5701295..5701319 (25 bp)
GATGATGGCAGCTTAGCTTCAGTCA
LOC_Os12g10660
Os.52538.1.S1_s_at--380--8251Chr12:5701301..5701325 (25 bp)
GGCAGCTTAGCTTCAGTCAAATTAA
LOC_Os12g10660
Os.52538.1.S1_s_at--1062--5891Chr12:5701331..5701355 (25 bp)
GAGCTGCTATAATTGATTTCCATGA
LOC_Os12g10660
Target Sequence 
GCCGGAGCAGCAGTGGCCGTGGAGTGACGTCTTCGCCGCCGACGACGACGATGACGTCAGCGCCGCCATGGAGCAGTGCT
ACTATCATGGCATCTCTGAACCTCACTCCTCCAGCCTCACTGGATGATGGCAGCTTAGCTTCAGTCAAATTAATTAATGA
GCTGCTATAATTGATTTCCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52538.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis