Browse Element(s) Details


Os.52538.1.S1_at

Description gb:AK067820.1
DB_XREF= gi:32977838
TID=Os.52538.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52538 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013117D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013117D12, full insert sequence.
FL= gb:AK067820.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1066011/11Salt tolerance-like protein At1g78600, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10630OsAffx.31685.1.S1_at11/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed
LOC_Os12g10630OsAffx.24770.1.S1_x_at1/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed
LOC_Os12g10640Os.16645.1.A1_at11/1112+5683582..5688883expressed protein
LOC_Os12g10650OsAffx.31686.1.S1_s_at11/1112+5691948..5695222expressed protein
LOC_Os12g10660Os.52538.1.S1_at11/1112+5698772..5701407Salt tolerance-like protein At1g78600, putative, expressed
LOC_Os12g10660Os.52538.1.S1_s_at11/1112+5698772..5701407Salt tolerance-like protein At1g78600, putative, expressed
LOC_Os12g10670OsAffx.7551.1.S1_at11/1112+5702034..5707190ATPase, AAA family protein, expressed
LOC_Os12g10680NANA12+5715536..5719180retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009651biological_processresponse to salt stress
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52538.1.S1_at--189--2771Chr12:5700880..5700904 (25 bp)
AAGACGGGCTACTTCTTCTGCCTCG
LOC_Os12g10660
Os.52538.1.S1_at--1141--1391Chr12:5700881..5700905 (25 bp)
AGACGGGCTACTTCTTCTGCCTCGA
LOC_Os12g10660
Os.52538.1.S1_at--424--5751Chr12:5700882..5700906 (25 bp)
GACGGGCTACTTCTTCTGCCTCGAG
LOC_Os12g10660
Os.52538.1.S1_at--827--1911Chr12:5700883..5700907 (25 bp)
ACGGGCTACTTCTTCTGCCTCGAGG
LOC_Os12g10660
Os.52538.1.S1_at--691--7271Chr12:5700943..5700967 (25 bp)
GTCCACACCGCCACTGCGCACGCCG
LOC_Os12g10660
Os.52538.1.S1_at--753--3271Chr12:5701113..5701137 (25 bp)
CAACAACAATGGCCGGTCGCCGGCG
LOC_Os12g10660
Os.52538.1.S1_at--87--6391Chr12:5701359..5701383 (25 bp)
GATCCCACAGAGGTCATCAACATCG
LOC_Os12g10660
Os.52538.1.S1_at--643--531Chr12:5701360..5701384 (25 bp)
ATCCCACAGAGGTCATCAACATCGA
LOC_Os12g10660
Os.52538.1.S1_at--338--9331Chr12:5701361..5701385 (25 bp)
TCCCACAGAGGTCATCAACATCGAG
LOC_Os12g10660
Os.52538.1.S1_at--759--4171Chr12:5701362..5701386 (25 bp)
CCCACAGAGGTCATCAACATCGAGA
LOC_Os12g10660
Os.52538.1.S1_at--560--4371Chr12:5701363..5701387 (25 bp)
CCACAGAGGTCATCAACATCGAGAA
LOC_Os12g10660
Target Sequence 
AAGACGGGCTACTTCTTCTGCCTCGAGGACCGCGCCCTGCTCTGCCGGAGCTGCGACGTCGCCGTCCACACCGCCACTGC
GCACGCCGCCGCCCACCGCCGCTTCCTCATCACCGGCGTCCGCATCGGCGGCAGCGTCGACGCCGCCGCCGCGGCCGACG
TCATCGTCAGCCCAACAAGCAGCAGCATCGCGCCGGCCGGCTCGGCCAGCAGCAACCACGCCGGCGCCGCCGGCAACAAC
AATGGCCGGTCGCCGGCGCCGGTGAGGTTCTCAGGGGGAGACGGCGGCGTTGAGCCGGAGCAGCAGTGGCCGTGGAGTGA
CGTCTTCGCCGCCGACGACGACGATGACGTCAGCGCCGCCATGGAGCAGTGCTACTATCATGGCATCTCTGAACCTCACT
CCTCCAGCCTCACTGGATGATGGCAGCTTAGCTTCAGTCAAATTAATTAATGAGCTGCTATAATTGATTTCCATGAACTG
ATCCCACAGAGGTCATCAACATCGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52538.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis