Browse Element(s) Details


Os.16692.1.S1_x_at

Description gb:AK099827.1
DB_XREF= gi:32985036
TID=Os.16692.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16692 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0078O01.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013103I15, full insert sequence.
FL= gb:AK099827.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3581011/11Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35770Os.7675.1.S1_at11/1110+18800270..18803895expressed protein
LOC_Os10g35770Os.21300.2.S1_x_at1/1110+18800270..18803895expressed protein
LOC_Os10g35780OsAffx.18527.1.S1_at10/1110+18805819..18806873hypothetical protein
LOC_Os10g35790Os.46127.1.S1_x_at2/1110+18812615..18813979Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35800Os.16692.2.S1_at11/1110+18816916..18818979expressed protein
LOC_Os10g35800OsAffx.26828.1.S1_x_at1/1110+18816916..18818979expressed protein
LOC_Os10g35810OsAffx.18528.1.S1_at11/1110+18818163..18821306Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative, expressed
LOC_Os10g35810Os.16692.1.S1_x_at11/1110+18818163..18821306Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative, expressed
LOC_Os10g35820Os.7563.1.S1_at11/1110+18822696..18823361expressed protein
LOC_Os10g35830OsAffx.30680.1.S1_at11/1110+18824973..18826935hypothetical protein
LOC_Os10g35830OsAffx.30680.1.S1_x_at10/1110+18824973..18826935hypothetical protein
LOC_Os10g35830OsAffx.30680.2.S1_at9/1110+18824973..18826935hypothetical protein
LOC_Os10g35840Os.11129.1.S1_at11/1110+18829486..18832897Glutamyl-tRNA reductase, chloroplast precursor, putative, expressed
LOC_Os10g35850Os.4688.1.S1_at11/1110+18836717..18839202Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os10g35870Os.4609.1.S1_a_at11/1110+18842149..18844448Membrane steroid binding protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16692.1.S1_x_at--432--6411Chr10:18819309..18819333 (25 bp)
GATCTCCGGTTTTGCGATTACACAA
LOC_Os10g35810
Os.16692.1.S1_x_at--983--8151Chr10:18819264..18819288 (25 bp)
GGAAAATCTCTAGCTGCAGCCTTGA
LOC_Os10g35810
Os.16692.1.S1_x_at--972--5071Chr10:18819249..18819273 (25 bp)
GCAGCCTTGATGTCCGATTCAAAGT
LOC_Os10g35810
Os.16692.1.S1_x_at--455--931Chr10:18818973..18818997 (25 bp)
AGGAACACCGTCTTGTCAGGATCAA
LOC_Os10g35810
Os.16692.1.S1_x_at--1028--7951Chr10:18818955..18818979 (25 bp)
GGATCAACCTTCGATGACGCTAAAA
LOC_Os10g35810
Os.16692.1.S1_x_at--434--6451Chr10:18818905..18818929 (25 bp)
GATAATCGGCTACATTGACCTTCAG
LOC_Os10g35810
Os.16692.1.S1_x_at--618--1371Chr10:18818839..18818863 (25 bp)
AGAGCTGGGCTGCAGATGATCCACC
LOC_Os10g35810
Os.16692.1.S1_x_at--418--9291Chr10:18818809..18818833 (25 bp)
TCCCACCTTTCTATAACCGTTTATG
LOC_Os10g35810
Os.16692.1.S1_x_at--628--1371Chr10:18818741..18818765 (25 bp)
AGAGCCGACATGAATCCTTTTCTTC
LOC_Os10g35810
Os.16692.1.S1_x_at--350--751Chr10:18818713..18818737 (25 bp)
ATGTATCTACAAACCTCTGCACAAC
LOC_Os10g35810
Os.16692.1.S1_x_at--552--3771Chr10:18818699..18818723 (25 bp)
CTCTGCACAACTTTTCTTCCATATA
LOC_Os10g35810
Target Sequence 
GATCTCCGGTTTTGCGATTACACAAACGAGAAAACTAATCTGAAAGGAAAATCTCTAGCTGCAGCCTTGATGTCCGATTC
AAAGTTTGATGGGGCCGACATGTCTGAAGTTGTGATGTCCAAAGCTTATGCTGTGGGGGCAAGCTTCAAAGGAACGGATT
TCACAAATGCAGTAATAGACCGTGTCAATTTTGAGAAGGCCGATCTCCAAGGGGCAATCTTCAGGAACACCGTCTTGTCA
GGATCAACCTTCGATGACGCTAAAATGCAGGACGTCGTGTTTGAGGACACGATAATCGGCTACATTGACCTTCAGAAGCT
ATGCACCAACACTTCCATCAGCGCAGACTCAAGATTAGAGCTGGGCTGCAGATGATCCACCCAAATTCCCACCTTTCTAT
AACCGTTTATGTCAATGTTAACAGTGTTTCGATGATTAAGTCAAGCCTGTTTATAGAGCCGACATGAATCCTTTTCTTCG
ATATGTATCTACAAACCTCTGCACAACTTTTCTTCCATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16692.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis