Browse Element(s) Details


Os.16692.2.S1_at

Description gb:AK120900.1
DB_XREF= gi:37990523
TID=Os.16692.2
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16692 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0078O01.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030M03, full insert sequence.
FL= gb:AK120900.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3580011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35770Os.7675.1.S1_at11/1110+18800270..18803895expressed protein
LOC_Os10g35770Os.21300.2.S1_x_at1/1110+18800270..18803895expressed protein
LOC_Os10g35780OsAffx.18527.1.S1_at10/1110+18805819..18806873hypothetical protein
LOC_Os10g35790Os.46127.1.S1_x_at2/1110+18812615..18813979Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35800Os.16692.2.S1_at11/1110+18816916..18818979expressed protein
LOC_Os10g35800OsAffx.26828.1.S1_x_at1/1110+18816916..18818979expressed protein
LOC_Os10g35810OsAffx.18528.1.S1_at11/1110+18818163..18821306Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative, expressed
LOC_Os10g35810Os.16692.1.S1_x_at11/1110+18818163..18821306Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative, expressed
LOC_Os10g35820Os.7563.1.S1_at11/1110+18822696..18823361expressed protein
LOC_Os10g35830OsAffx.30680.1.S1_at11/1110+18824973..18826935hypothetical protein
LOC_Os10g35830OsAffx.30680.1.S1_x_at10/1110+18824973..18826935hypothetical protein
LOC_Os10g35830OsAffx.30680.2.S1_at9/1110+18824973..18826935hypothetical protein
LOC_Os10g35840Os.11129.1.S1_at11/1110+18829486..18832897Glutamyl-tRNA reductase, chloroplast precursor, putative, expressed
LOC_Os10g35850Os.4688.1.S1_at11/1110+18836717..18839202Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os10g35870Os.4609.1.S1_a_at11/1110+18842149..18844448Membrane steroid binding protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16692.2.S1_at--77--8511Chr10:18818433..18818457 (25 bp)
TGGCAGGCAAGCTAGCACACATGGT
LOC_Os10g35800
Os.16692.2.S1_at--663--1111Chr10:18818465..18818489 (25 bp)
AGTGTTGCTATAGTGATCTCATGGA
LOC_Os10g35800
Os.16692.2.S1_at--267--6191Chr10:18818556..18818580 (25 bp)
GAGGCATAATGTTCTTCCTTTTTGT
LOC_Os10g35800
Os.16692.2.S1_at--391--7071Chr10:18818581..18818605 (25 bp)
GTAATCTGGTGTTTGCAGTTTGCAC
LOC_Os10g35800
Os.16692.2.S1_at--1089--5511Chr10:18818744..18818768 (25 bp)
GAAAAGGATTCATGTCGGCTCTATA
LOC_Os10g35800
Os.16692.2.S1_at--439--9451Chr10:18818758..18818782 (25 bp)
TCGGCTCTATAAACAGGCTTGACTT
LOC_Os10g35800
Os.16692.2.S1_at--323--8571Chr10:18818841..18818865 (25 bp)
TGGATCATCTGCAGCCCAGCTCTAA
LOC_Os10g35800
Os.16692.2.S1_at--810--4811Chr10:18818859..18818883 (25 bp)
GCTCTAATCTTGAGTCTGCGCTGAT
LOC_Os10g35800
Os.16692.2.S1_at--911--6611Chr10:18818890..18818914 (25 bp)
GTTGGTGCATAGCTTCTGAAGGTCA
LOC_Os10g35800
Os.16692.2.S1_at--508--9991Chr10:18818918..18818942 (25 bp)
TAGCCGATTATCGTGTCCTCAAACA
LOC_Os10g35800
Os.16692.2.S1_at--934--7251Chr10:18818947..18818971 (25 bp)
GTCCTGCATTTTAGCGTCATCGAAG
LOC_Os10g35800
Target Sequence 
TGGCAGGCAAGCTAGCACACATGGTAATGTAGAGTGTTGCTATAGTGATCTCATGGAATANATCATGCATAAAACCACCA
GTAATGTTATTCCAGAAATTGTGAGCAATCTCTATGTATGGGAGAGGCATAATGTTCTTCCTTTTTGTGTAATCTGGTGT
TTGCAGTTTGCACAGATTGTGAGTACATGAATGTCAAANTGTGGCTTGTAGTGCATTTGATTGCATGCCGAATATGTGTG
ATGTACAGAGGTTTGTAAATACTACATATATGGAAGAAAAGTTGTGCAGAGGTTTGTAGATACATATCGAAGAAAAGGAT
TCATGTCGGCTCTATAAACAGGCTTGACTTAATCATCGAAACACTGTTAACATTGACATAAACGGTTATAGAAAGGTGGG
AATTTGGGTGGATCATCTGCAGCCCAGCTCTAATCTTGAGTCTGCGCTGATGGAAGTGTTGGTGCATAGCTTCTGAAGGT
CAATGTAGCCGATTATCGTGTCCTCAAACACGACGTCCTGCATTTTAGCGTCATCGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16692.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis