Browse Element(s) Details


Os.16870.1.A1_at

Description gb:AK100155.1
DB_XREF= gi:32985364
TID=Os.16870.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16870 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019E12, full insert sequence.
FL= gb:AK100155.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6060011/11Zinc knuckle family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60530Os.9042.1.S1_at10/113+34346027..34349308Ras-related protein ARA-3, putative, expressed
LOC_Os03g60540OsAffx.13562.1.S1_at11/113+34349796..34350356Zinc finger, C2H2 type family protein
LOC_Os03g60550Os.17427.1.S1_at11/113+34351774..34358073ThiF family protein, expressed
LOC_Os03g60550OsAffx.25657.1.S1_s_at1/113+34351774..34358073ThiF family protein, expressed
LOC_Os03g60560Os.28441.1.S1_at11/113+34363114..34364034Zinc finger, C2H2 type family protein, expressed
LOC_Os03g60570Os.15874.1.A1_at11/113+34366638..34367547Zinc finger, C2H2 type family protein, expressed
LOC_Os03g60580Os.39973.1.S1_s_at11/113+34369405..34370315Actin-depolymerizing factor 4, putative, expressed
LOC_Os03g60590Os.12749.1.S1_s_at11/113+34370595..34373158Actin-depolymerizing factor 3, putative, expressed
LOC_Os03g60600Os.16870.1.A1_at11/113+34373945..34377386Zinc knuckle family protein, expressed
LOC_Os03g60610Os.7166.1.S1_at11/113+34378288..34383367CRAL/TRIO domain containing protein, expressed
LOC_Os03g60620Os.11822.1.S1_at11/113+34385257..34389873Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os03g60620OsAffx.29152.1.S1_s_at1/113+34385257..34389873Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os03g60630OsAffx.3658.1.S1_at11/113+34394469..34395536Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16870.1.A1_at--23--8971Chr03:34374433..34374457 (25 bp)
TGACAACCATGATCTGTGGCACCTG
LOC_Os03g60600
Os.16870.1.A1_at--510--8891Chr03:34374384..34374408 (25 bp)
TGAGTGCCCATCTGCAAGGATGTTT
LOC_Os03g60600
Os.16870.1.A1_at--432--2911Chr03:34374369..34374393 (25 bp)
AAGGATGTTTGATCGTGGGCTCCGC
LOC_Os03g60600
Os.16870.1.A1_at--854--191Chr03:34374295..34374319 (25 bp)
ATTTCGCATTGTTCCATTGATTCTG
LOC_Os03g60600
Os.16870.1.A1_at--359--1551Chr03:34374263..34374287 (25 bp)
AGCTTGCTTGACTATACCGAAACGG
LOC_Os03g60600
Os.16870.1.A1_at--520--6731Chr03:34374239..34374263 (25 bp)
GTTCTTTTATACCTTTTGCTCTCTG
LOC_Os03g60600
Os.16870.1.A1_at--241--3071Chr03:34374160..34374184 (25 bp)
AATCAGGGTGTTGTAGCCTTTCGTG
LOC_Os03g60600
Os.16870.1.A1_at--658--7851Chr03:34374083..34374107 (25 bp)
GGTAGACCAGGCCATATCAAGTATT
LOC_Os03g60600
Os.16870.1.A1_at--880--6851Chr03:34374048..34374072 (25 bp)
GTTTGAGCTATTTGACTCCTCCAAG
LOC_Os03g60600
Os.16870.1.A1_at--623--1971Chr03:34374010..34374034 (25 bp)
ACTGACTGTTGCGTCGAGTTGTCCT
LOC_Os03g60600
Os.16870.1.A1_at--811--6051Chr03:34373995..34374019 (25 bp)
GAGTTGTCCTCATTGTTCTGTATTC
LOC_Os03g60600
Target Sequence 
TGACAACCATGATCTGTGGCACCTGCGGTGGGAGGGGTCATATGTCATATGAGTGCCCATCTGCAAGGATGTTTGATCGT
GGGCTCCGCAGGTTNTGATGACAGCCATCCATACGCACTGCTGGTTNTGATGCTCGGAATTTCGCATTGTTCCATTGATT
CTGCTTAGATAGCTTGCTTGACTATACCGAAACGGTTCTTTTATACCTTTTGCTCTCTGGGANTTGAGGAATGATTCTGT
AGGATGTATTTGGGTGAAACTTTTGCTTGTGTTAATCAGGGTGTTGTAGCCTTTCGTGGGGGAACAAAATGATGTATCTT
CCCAAGAGAGACATCCAGAAAAACTGCTTTGGTAGACCAGGCCATATCAAGTATTGTGCATGACTGTTTGAGCTATTTGA
CTCCTCCAAGCTTGCTCCTCCCCACTGACTGTTGCGTCGAGTTGTCCTCATTGTTCTGTATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16870.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis