Browse Element(s) Details


Os.16890.1.S2_at

Description gb:AK102934.1
DB_XREF= gi:32988143
TID=Os.16890.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.16890 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033126P16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114I03, full insert sequence.
FL= gb:AK102934.1 gb:AK061536.1 gb:AK103369.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4411011/11amidohydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44030Os.52693.1.S1_at11/114+25871571..25874685expressed protein
LOC_Os04g44050OsAffx.14262.1.S1_at11/114+25878628..25879919expressed protein
LOC_Os04g44060Os.5916.1.S1_s_at11/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44060OsAffx.24678.1.S1_at11/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44060Os.31191.2.S1_x_at1/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44070Os.53205.1.S1_at11/114+25884676..25886798expressed protein
LOC_Os04g44080NANA4+25887401..25887986hypothetical protein
LOC_Os04g44090Os.54162.1.S1_at11/114+25889081..25892266expressed protein
LOC_Os04g44100Os.53622.1.S1_at11/114+25892608..25894832expressed protein
LOC_Os04g44110Os.16890.1.S1_at11/114+25895663..25899284amidohydrolase family protein, expressed
LOC_Os04g44110Os.16890.1.S2_at11/114+25895663..25899284amidohydrolase family protein, expressed
LOC_Os04g44120NANA4+25899417..25899785expressed protein
LOC_Os04g44130OsAffx.26451.1.S1_at11/114+25901343..25901703Gamma-thionins family protein
LOC_Os04g44140OsAffx.30187.4.S1_at11/114+25903166..25903624hypothetical protein
LOC_Os04g44150Os.54940.1.S1_at11/114+25911629..25915274oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g44160OsAffx.26452.1.S1_at11/114+25919936..25920142hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009850biological_processauxin metabolism
GO:0008237molecular_functionmetallopeptidase activity
GO:0010178molecular_functionIAA-amino acid conjugate hydrolase activity
GO:0010179molecular_functionIAA-Ala conjugate hydrolase activity
GO:0010210molecular_functionIAA-Phe conjugate hydrolase activity
GO:0010211molecular_functionIAA-Leu conjugate hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16890.1.S2_at--716--8091Chr04:25898189..25898213 (25 bp)
GGAGCCTCACTACTGAAGGTCTATA
LOC_Os04g44110
Os.16890.1.S2_at--883--9951Chr04:25898710..25898734 (25 bp)
TACCCAATGTATCCAGCTGTCTTTA
LOC_Os04g44110
Os.16890.1.S2_at--893--2751Chr04:25898828..25898852 (25 bp)
AAGACTTCGCTTTCTACCAACAGTT
LOC_Os04g44110
Os.16890.1.S2_at--944--1211Chr04:25898853..25898877 (25 bp)
AGTTCCTGGAGTTATGTTTGGCATT
LOC_Os04g44110
Os.16890.1.S2_at--1150--3431Chr04:25898903..25898927 (25 bp)
CAGTTCACACTGTTCATAACCCTAA
LOC_Os04g44110
Os.16890.1.S2_at--944--9771Chr04:25898919..25898943 (25 bp)
TAACCCTAAGTTCTTCGTTGATGAG
LOC_Os04g44110
Os.16890.1.S2_at--483--3831Chr04:25898975..25898999 (25 bp)
CTGCCCTTGCAGAAATGTACCTTAC
LOC_Os04g44110
Os.16890.1.S2_at--1126--5571Chr04:25898986..25899010 (25 bp)
GAAATGTACCTTACTGAGCGCTCCA
LOC_Os04g44110
Os.16890.1.S2_at--769--8171Chr04:25899025..25899049 (25 bp)
GGAAGCCAGCATTCGCATTGACATT
LOC_Os04g44110
Os.16890.1.S2_at--782--8831Chr04:25899113..25899137 (25 bp)
TGATCATTTTAGTAGCGTGCAAGGC
LOC_Os04g44110
Os.16890.1.S2_at--154--2951Chr04:25899133..25899157 (25 bp)
AAGGCGTTCTTGTACTCAGGTATGC
LOC_Os04g44110
Target Sequence 
GGAGCCTCACTACTGAAGGTCTATATCGTCTACAGAAAAGGGTCAAGGAGGTGGTAGAAGGGCAGGCAGCTGTGCACAGA
TGCAAGGGAGTTNGTCCAGATAAAAAGGGACGACTACCCAATGTATCCAGCTGTCTTTAATGATGAGAAACTGCATCACC
ATGTAGAAACTGTGGGCAGACGATTACTTGGTCCAGACAAGGTGAAGCCGGGAGAGAAGATTATGGCTGGCGAAGACTTC
GCTTTCTACCAACAGTTAGTTCCTGGAGTTATGTTTGGCATTGGTATTAGAAACGGGGAAGTTGGTTCAGTTCACACTGT
TCATAACCCTAAGTTCTTCGTTGATGAGGATGTTATCCCAATTGGAGCTGCACTGCATACTGCCCTTGCAGAAATGTACC
TTACTGAGCGCTCCACAGAAGGTGAAGACGGAAGCCAGCATTCGCATTGACATTCGTGCGTTGAACAGTTCGAGTGTACA
AGTATCCAAGAGAATAATCATGCTTCAAGAATCCAGATGATCATTTTAGTAGCGTGCAAGGCGTTCTTGTACTCAGGTAT
GC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16890.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis