Browse Element(s) Details


Os.54162.1.S1_at

Description gb:AK102243.1
DB_XREF= gi:32987452
TID=Os.54162.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54162 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088E04, full insert sequence.
FL= gb:AK102243.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4409011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44000NANA4+25860485..25865227transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g44010Os.14491.2.S1_x_at2/114+25865575..25867729transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g44010Os.47463.1.S1_x_at2/114+25865575..25867729transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g44020Os.57352.1.S1_at2/114+25868330..25868703expressed protein
LOC_Os04g44030Os.52693.1.S1_at11/114+25871571..25874685expressed protein
LOC_Os04g44050OsAffx.14262.1.S1_at11/114+25878628..25879919expressed protein
LOC_Os04g44060Os.5916.1.S1_s_at11/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44060OsAffx.24678.1.S1_at11/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44060Os.31191.2.S1_x_at1/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44070Os.53205.1.S1_at11/114+25884676..25886798expressed protein
LOC_Os04g44080NANA4+25887401..25887986hypothetical protein
LOC_Os04g44090Os.54162.1.S1_at11/114+25889081..25892266expressed protein
LOC_Os04g44100Os.53622.1.S1_at11/114+25892608..25894832expressed protein
LOC_Os04g44110Os.16890.1.S1_at11/114+25895663..25899284amidohydrolase family protein, expressed
LOC_Os04g44110Os.16890.1.S2_at11/114+25895663..25899284amidohydrolase family protein, expressed
LOC_Os04g44120NANA4+25899417..25899785expressed protein
LOC_Os04g44130OsAffx.26451.1.S1_at11/114+25901343..25901703Gamma-thionins family protein
LOC_Os04g44140OsAffx.30187.4.S1_at11/114+25903166..25903624hypothetical protein
LOC_Os04g44150Os.54940.1.S1_at11/114+25911629..25915274oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54162.1.S1_at--892--6211Chr04:25891230..25891254 (25 bp)
GATGTGATTCACTCAACAGGTTCAA
LOC_Os04g44090
Os.54162.1.S1_at--1004--3471Chr04:25891246..25891270 (25 bp)
CAGGTTCAAATTCCATGCTTGCTGA
LOC_Os04g44090
Os.54162.1.S1_at--1122--851Chr04:25891293..25891317 (25 bp)
ATGGCTCTAGTTTCATTCACTGGTT
LOC_Os04g44090
Os.54162.1.S1_at--716--6591Chr04:25891587..25891611 (25 bp)
GATTGAACAGATGCGCTCTCTTAAA
LOC_Os04g44090
Os.54162.1.S1_at--677--291Chr04:25891633..25891657 (25 bp)
ATAGCTTTCATCAGGCGATGCCACG
LOC_Os04g44090
Os.54162.1.S1_at--336--591Chr04:25891650..25891674 (25 bp)
ATGCCACGATCTCCAAACTGCGGAA
LOC_Os04g44090
Os.54162.1.S1_at--413--2551Chr04:25891823..25891847 (25 bp)
AACTGCTTCTTGGACTTCTCAGGAA
LOC_Os04g44090
Os.54162.1.S1_at--1016--7911Chr04:25891863..25891887 (25 bp)
GGATCGCTATTCACCGGTTTTAGAA
LOC_Os04g44090
Os.54162.1.S1_at--441--1111Chr04:25892101..25892125 (25 bp)
AGTGTTGTTCGTATCAGTCTGTTGA
LOC_Os04g44090
Os.54162.1.S1_at--674--10531Chr04:25892142..25892166 (25 bp)
TTCATACACCCAGATTAACCCATAG
LOC_Os04g44090
Os.54162.1.S1_at--657--7331Chr04:25892178..25892202 (25 bp)
GTGCATGTATTTTCTTTCGCTTGTA
LOC_Os04g44090
Target Sequence 
GATGTGATTCACTCAACAGGTTCAAATTCCATGCTTGCTGAACAGGATCACTTTGATCTGCAAATGGCTCTAGTTTCATT
CACTGGTTTCCAGGAAGTGTTCATGAATTTTGAAGCTGTTACCTGCGAAAAGTTAGAAACAGCTATGCTGAGATTGAATT
ATTTGAAAAAGCAACAGGGAAATCTGATTGAACAGATGCGCTCTCTTAAAATGAGCGAACAGAGTTATCAGATAGCTTTC
ATCAGGCGATGCCACGATCTCCAAACTGCGGAAGCAGAGGTGGATCTGCTTGGTGATGAGGTGGAACTGCTTCTTGGACT
TCTCAGGAAGACATATAAAGCGTTGGATCGCTATTCACCGGTTTTAGAACACTATCTCGGGGTTAGGGAGATGCTGAAAC
TGCTTGGGAAGGAGCTAGCCCTGAGGCATCAGGTTTAGTACAGTGTTGTTCGTATCAGTCTGTTGATCAGTGAAACATAT
GCTTCATACACCCAGATTAACCCATAGACCTGGTTCAGGTGCATGTATTTTCTTTCGCTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis