Browse Element(s) Details


Os.5916.1.S1_s_at

Description gb:BE530955
DB_XREF= gi:9788945
DB_XREF=OC03F03
CLONE=Rice Microarray ID1286
TID=Os.5916.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.5916 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_179277.1 (A.thaliana) putative plasma membrane intrinsic protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4406011/11Aquaporin PIP2.2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43990Os.5467.1.S1_at11/114+25855615..25856780expressed protein
LOC_Os04g44000NANA4+25860485..25865227transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g44010Os.14491.2.S1_x_at2/114+25865575..25867729transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g44010Os.47463.1.S1_x_at2/114+25865575..25867729transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g44020Os.57352.1.S1_at2/114+25868330..25868703expressed protein
LOC_Os04g44030Os.52693.1.S1_at11/114+25871571..25874685expressed protein
LOC_Os04g44050OsAffx.14262.1.S1_at11/114+25878628..25879919expressed protein
LOC_Os04g44060Os.5916.1.S1_s_at11/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44060OsAffx.24678.1.S1_at11/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44060Os.31191.2.S1_x_at1/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44070Os.53205.1.S1_at11/114+25884676..25886798expressed protein
LOC_Os04g44080NANA4+25887401..25887986hypothetical protein
LOC_Os04g44090Os.54162.1.S1_at11/114+25889081..25892266expressed protein
LOC_Os04g44100Os.53622.1.S1_at11/114+25892608..25894832expressed protein
LOC_Os04g44110Os.16890.1.S1_at11/114+25895663..25899284amidohydrolase family protein, expressed
LOC_Os04g44110Os.16890.1.S2_at11/114+25895663..25899284amidohydrolase family protein, expressed
LOC_Os04g44120NANA4+25899417..25899785expressed protein
LOC_Os04g44130OsAffx.26451.1.S1_at11/114+25901343..25901703Gamma-thionins family protein
LOC_Os04g44140OsAffx.30187.4.S1_at11/114+25903166..25903624hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006833biological_processwater transport
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5916.1.S1_s_at--121--4151Chr04:25882351..25882375 (25 bp)
CGCTGGATGCATGACCGGAGGCATT
LOC_Os04g44060
Os.5916.1.S1_s_at--935--511Chr04:25882389..25882413 (25 bp)
ATCGATATCAGAGAGGGCCTCCGGT
LOC_Os04g44060
Os.5916.1.S1_s_at--874--4251Chr04:25882409..25882433 (25 bp)
CCGGTCAGCTCGCTGTTAATGATCA
LOC_Os04g44060
Os.5916.1.S1_s_at--654--6431Chr04:25882429..25882453 (25 bp)
GATCAGCTAGCTGTTCGTTTGCCTG
LOC_Os04g44060
Os.5916.1.S1_s_at--639--6851Chr04:25882445..25882469 (25 bp)
GTTTGCCTGCCAGAGCTAGTTTATC
LOC_Os04g44060
Os.5916.1.S1_s_at--710--1531Chr04:25882458..25882482 (25 bp)
AGCTAGTTTATCCTCGGTTTCTGGC
LOC_Os04g44060
Os.5916.1.S1_s_at--500--10311Chr04:25882483..25882507 (25 bp)
TTTCTGCGTCAGCTAGCTTCTTGAT
LOC_Os04g44060
Os.5916.1.S1_s_at--466--9471Chr04:25882519..25882543 (25 bp)
TCTGTAATTCCTGAGCTATGCTGCA
LOC_Os04g44060
Os.5916.1.S1_s_at--488--8771Chr04:25882548..25882572 (25 bp)
TGTTTGCTCAATGTTTCTTCCAGGT
LOC_Os04g44060
Os.5916.1.S1_s_at--648--9571Chr04:25882563..25882587 (25 bp)
TCTTCCAGGTGTGCTTTTCATGTTA
LOC_Os04g44060
Os.5916.1.S1_s_at--904--4611Chr04:25882615..25882639 (25 bp)
GCGAGCTGTGTGCATATGGTACCAA
LOC_Os04g44060
Target Sequence 
CGCTGGATGCATGACCGGAGGCATTGAAGTGTAGATATATCGATATCAGAGAGGGCCTCCGGTCAGCTCGCTGTTAATGA
TCAGCTAGCTGTTCGTTTGCCTGCCAGAGCTAGTTTATCCTCGGTTTCTGGCTTTCTGCGTCAGCTAGCTTCTTGATCAT
CTTCAGCTTCTGTAATTCCTGAGCTATGCTGCATAATTGTTTGCTCAATGTTTCTTCCAGGTGTGCTTTTCATGTTAACT
TTGTATGTGTCTGTATGTATATATGCGAGCTGTGTGCATATGGTACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5916.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis