Browse Element(s) Details


Os.5467.1.S1_at

Description gb:AK065832.1
DB_XREF= gi:32975850
TID=Os.5467.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5467 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013036A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013036A08, full insert sequence.
FL= gb:AK065832.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4399011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43940Os.46862.1.S1_at1/114+25831972..25833398hypothetical protein
LOC_Os04g43940OsAffx.31487.2.S1_at1/114+25831972..25833398hypothetical protein
LOC_Os04g43950OsAffx.22385.1.S1_x_at5/114+25833742..25838154retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43950OsAffx.20329.1.S1_at3/114+25833742..25838154retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43960NANA4+25838705..25839190transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43970Os.28943.1.S1_x_at3/114+25842288..25844816retrotransposon protein, putative, unclassified
LOC_Os04g43980NANA4+25845502..25851463retrotransposon protein, putative, unclassified
LOC_Os04g43990Os.5467.1.S1_at11/114+25855615..25856780expressed protein
LOC_Os04g44000NANA4+25860485..25865227transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g44010Os.14491.2.S1_x_at2/114+25865575..25867729transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g44010Os.47463.1.S1_x_at2/114+25865575..25867729transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g44020Os.57352.1.S1_at2/114+25868330..25868703expressed protein
LOC_Os04g44030Os.52693.1.S1_at11/114+25871571..25874685expressed protein
LOC_Os04g44050OsAffx.14262.1.S1_at11/114+25878628..25879919expressed protein
LOC_Os04g44060Os.5916.1.S1_s_at11/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44060OsAffx.24678.1.S1_at11/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44060Os.31191.2.S1_x_at1/114+25880249..25882687Aquaporin PIP2.2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5467.1.S1_at--247--1451Chr04:25856031..25856055 (25 bp)
AGAAGACCGGCTTCGAGGACTGACC
LOC_Os04g43990
Os.5467.1.S1_at--1071--8111Chr04:25856015..25856039 (25 bp)
GGACTGACCGGCGAGCTAGCTGATC
LOC_Os04g43990
Os.5467.1.S1_at--624--9991Chr04:25855999..25856023 (25 bp)
TAGCTGATCACTCCCGGTGGTTGGC
LOC_Os04g43990
Os.5467.1.S1_at--224--4531Chr04:25855971..25855995 (25 bp)
GCCGCGCAGACGTGCAGTAGGTTTA
LOC_Os04g43990
Os.5467.1.S1_at--674--191Chr04:25855900..25855924 (25 bp)
ATTTCTTTTTCTTTCGCCATGGACA
LOC_Os04g43990
Os.5467.1.S1_at--580--2791Chr04:25855817..25855841 (25 bp)
AAGAGTGGGTGGTTTGTTCAATCAA
LOC_Os04g43990
Os.5467.1.S1_at--488--6611Chr04:25855761..25855785 (25 bp)
GTTGGAGTTGGTTGATCAGCTGATC
LOC_Os04g43990
Os.5467.1.S1_at--81--9671Chr04:25855746..25855770 (25 bp)
TCAGCTGATCGATCCTGTATTTTTT
LOC_Os04g43990
Os.5467.1.S1_at--1096--10311Chr04:25855722..25855746 (25 bp)
TTTCTACCCTTCGAGTATGGGAAAT
LOC_Os04g43990
Os.5467.1.S1_at--278--7631Chr04:25855704..25855728 (25 bp)
GGGAAATTCCACATTACTGCACAGT
LOC_Os04g43990
Os.5467.1.S1_at--292--51Chr04:25855643..25855667 (25 bp)
ATTGTACATGCCGTTTTGTGCGAAA
LOC_Os04g43990
Target Sequence 
AGAAGACCGGCTTCGAGGACTGACCGGCGAGCTAGCTGATCACTCCCGGTGGTTGGCCTCGCCGCGCAGACGTGCAGTAG
GTTTAAAATGAGTACTTAGTAGTACTAATTACTTTATTCTCTTTTGTTCTTATTTCTTTTTCTTTCGCCATGGACAAGAT
AAGAAATTGGGTAGTATTCCTAGTCCTAGAAGGCTAGATGCAAGAGAGGACAGGAAGAGTGGGTGGTTTGTTCAATCAAG
GTGTGACAATTTTGAGGGCACCTGGAGATGGTTGGAGTTGGTTGATCAGCTGATCGATCCTGTATTTTTTTTCTACCCTT
CGAGTATGGGAAATTCCACATTACTGCACAGTGTATGTATTATACCACTGTAGTATGTAGTATGCAGAATTGTACATGCC
GTTTTGTGCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis