Browse Element(s) Details


Os.53622.1.S1_at

Description gb:AK073622.1
DB_XREF= gi:32983645
TID=Os.53622.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53622 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033049O03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033049O03, full insert sequence.
FL= gb:AK073622.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4410011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44010Os.14491.2.S1_x_at2/114+25865575..25867729transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g44010Os.47463.1.S1_x_at2/114+25865575..25867729transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g44020Os.57352.1.S1_at2/114+25868330..25868703expressed protein
LOC_Os04g44030Os.52693.1.S1_at11/114+25871571..25874685expressed protein
LOC_Os04g44050OsAffx.14262.1.S1_at11/114+25878628..25879919expressed protein
LOC_Os04g44060Os.5916.1.S1_s_at11/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44060OsAffx.24678.1.S1_at11/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44060Os.31191.2.S1_x_at1/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44070Os.53205.1.S1_at11/114+25884676..25886798expressed protein
LOC_Os04g44080NANA4+25887401..25887986hypothetical protein
LOC_Os04g44090Os.54162.1.S1_at11/114+25889081..25892266expressed protein
LOC_Os04g44100Os.53622.1.S1_at11/114+25892608..25894832expressed protein
LOC_Os04g44110Os.16890.1.S1_at11/114+25895663..25899284amidohydrolase family protein, expressed
LOC_Os04g44110Os.16890.1.S2_at11/114+25895663..25899284amidohydrolase family protein, expressed
LOC_Os04g44120NANA4+25899417..25899785expressed protein
LOC_Os04g44130OsAffx.26451.1.S1_at11/114+25901343..25901703Gamma-thionins family protein
LOC_Os04g44140OsAffx.30187.4.S1_at11/114+25903166..25903624hypothetical protein
LOC_Os04g44150Os.54940.1.S1_at11/114+25911629..25915274oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53622.1.S1_at--863--6411Chr04:25893103..25893127 (25 bp)
GATCTCTTGCTACAGTTCCATGGGT
LOC_Os04g44100
Os.53622.1.S1_at--368--8851Chr04:25894380..25894404 (25 bp)
TGAGGCGCCTACTGAATAGTCCATA
LOC_Os04g44100
Os.53622.1.S1_at--207--10811Chr04:25894411..25894435 (25 bp)
TTGTAGGTCATACACTCGTGCTGTT
LOC_Os04g44100
Os.53622.1.S1_at--922--2631Chr04:25894495..25894519 (25 bp)
AACCTTCCCAATACTGAGGCAGCTA
LOC_Os04g44100
Os.53622.1.S1_at--860--6892Chr04:25894558..25894582 (25 bp)
GTATCAAGCAGTACTCATCAACATA
LOC_Os04g44100
Os.53622.1.S1_at--591--671Chr04:25894583..25894607 (25 bp)
ATGAGCCACTTAGCCTTACAGATTG
LOC_Os04g44100
Os.53622.1.S1_at--240--5251Chr04:25894690..25894714 (25 bp)
GAATCATTTGTCTCCTCAGGCGTTA
LOC_Os04g44100
Os.53622.1.S1_at--1096--9231Chr04:25894702..25894726 (25 bp)
TCCTCAGGCGTTAATTCGTTATCCC
LOC_Os04g44100
Os.53622.1.S1_at--445--9231Chr04:25894734..25894758 (25 bp)
TCCTACGCCACCAGTCTTATGAGTG
LOC_Os04g44100
Os.53622.1.S1_at--208--711Chr04:25894752..25894776 (25 bp)
ATGAGTGGATTGACAGTTGCTTGCT
LOC_Os04g44100
Os.53622.1.S1_at--119--6671Chr04:25894767..25894791 (25 bp)
GTTGCTTGCTCAAACATGTTCCTGG
LOC_Os04g44100
Target Sequence 
GATCTCTTGCTACAGTTCCATGGGTAGGATGAGTGCAGGGTTCATTGGCACAATACGAACGAAATGATGAGGCGCCTACT
GAATAGTCCATACCAAGTTTGTAGGTCATACACTCGTGCTGTTCTTCACGAAGATATACACAAACATATCAAACAAACCA
CAAGCAAATAGGTGAAATCACCAACCTTCCCAATACTGAGGCAGCTAGAAATCAACACTTCAGCAGTGAGTGTGAGACAG
AGCTAGTATCAAGCAGTACTCATCAACATAATGAGCCACTTAGCCTTACAGATTGTGTTATTTCCCAAAAAATAAAAAGT
GAGATGAAAGACTCAGATTTGAGTCCCAAGATTGTTTTGTTTTTCAGTAAATGGGCTGAATCATTTGTCTCCTCAGGCGT
TAATTCGTTATCCCCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGTTCCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis