Browse Element(s) Details


Os.16956.1.S1_s_at

Description gb:AK103608.1
DB_XREF= gi:32988817
TID=Os.16956.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16956 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1029_F04.26 (OJ1029_F04.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133I03, full insert sequence.
FL= gb:AK103608.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3505011/11early-responsive to dehydration protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35030OsAffx.738.1.S1_at11/111+19705016..19714045multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g35040Os.7812.2.S1_x_at11/111+19716678..19719705PRLI-interacting factor K, putative, expressed
LOC_Os01g35040Os.7812.1.S1_at11/111+19716678..19719705PRLI-interacting factor K, putative, expressed
LOC_Os01g35050Os.41024.1.S1_x_at11/111+19721372..19732327early-responsive to dehydration protein, putative, expressed
LOC_Os01g35050Os.16956.1.S1_s_at11/111+19721372..19732327early-responsive to dehydration protein, putative, expressed
LOC_Os01g35059NANA1+19741055..19741451NA
LOC_Os01g35070NANA1+19742726..19748177retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35080Os.46995.1.S1_x_at1/111+19751547..19753930retrotransposon protein, putative, unclassified
LOC_Os01g35080Os.46995.1.S1_at1/111+19751547..19753930retrotransposon protein, putative, unclassified
LOC_Os01g35090NANA1+19754087..19759617retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16956.1.S1_s_at--152--2311Chr01:19721707..19721731 (25 bp)
AAAGGATACCTGATGAATGCCTACA
LOC_Os01g35050
Os.16956.1.S1_s_at--502--2911Chr01:19721706..19721730 (25 bp)
AAGGATACCTGATGAATGCCTACAT
LOC_Os01g35050
Os.16956.1.S1_s_at--897--991Chr01:19721705..19721729 (25 bp)
AGGATACCTGATGAATGCCTACATC
LOC_Os01g35050
Os.16956.1.S1_s_at--631--7951Chr01:19721704..19721728 (25 bp)
GGATACCTGATGAATGCCTACATCC
LOC_Os01g35050
Os.16956.1.S1_s_at--127--6491Chr01:19721703..19721727 (25 bp)
GATACCTGATGAATGCCTACATCCA
LOC_Os01g35050
Os.16956.1.S1_s_at--277--311Chr01:19721702..19721726 (25 bp)
ATACCTGATGAATGCCTACATCCAC
LOC_Os01g35050
Os.16956.1.S1_s_at--413--4311Chr01:19721539..19721563 (25 bp)
CCTTCCCTTGCTGAAATTGTAAATG
LOC_Os01g35050
Os.16956.1.S1_s_at--1156--3631Chr01:19721538..19721562 (25 bp)
CTTCCCTTGCTGAAATTGTAAATGA
LOC_Os01g35050
Os.16956.1.S1_s_at--996--9311Chr01:19721536..19721560 (25 bp)
TCCCTTGCTGAAATTGTAAATGATC
LOC_Os01g35050
Os.16956.1.S1_s_at--931--5591Chr01:19721527..19721551 (25 bp)
GAAATTGTAAATGATCAACGGCTAT
LOC_Os01g35050
Os.16956.1.S1_s_at--213--7051Chr01:19721521..19721545 (25 bp)
GTAAATGATCAACGGCTATAAATAT
LOC_Os01g35050
Target Sequence 
AAAGGATACCTGATGAATGCCTACATCCACCCGGTGTTCAAAGGCGACGAGGACGACGAGAAGTTCTCCATCTCCGACGA
ACCAGAGGCGGAGCAGGTTCTCGTGGCGACAAAGCGCCAGTCCAGACGGAACACCCCAGTTCCGAGTAAATACAATGGCT
CTGAATCACCTTCCCTTGCTGAAATTGTAAATGATCAACGGCTATAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16956.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis