Browse Element(s) Details


Os.7812.1.S1_at

Description gb:AK104278.1
DB_XREF= gi:32989487
TID=Os.7812.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative PRLI-interacting factor K (OJ1029_F04.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-H07, full insert sequence.
FL= gb:AK072168.1 gb:AK104278.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3504011/11PRLI-interacting factor K, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34990OsAffx.21280.1.S1_s_at11/111+19690948..19691692hypothetical protein
LOC_Os01g35000OsAffx.11329.1.S1_at11/111+19693549..19694214hypothetical protein
LOC_Os01g35030OsAffx.738.1.S1_at11/111+19705016..19714045multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g35040Os.7812.2.S1_x_at11/111+19716678..19719705PRLI-interacting factor K, putative, expressed
LOC_Os01g35040Os.7812.1.S1_at11/111+19716678..19719705PRLI-interacting factor K, putative, expressed
LOC_Os01g35050Os.41024.1.S1_x_at11/111+19721372..19732327early-responsive to dehydration protein, putative, expressed
LOC_Os01g35050Os.16956.1.S1_s_at11/111+19721372..19732327early-responsive to dehydration protein, putative, expressed
LOC_Os01g35059NANA1+19741055..19741451NA
LOC_Os01g35070NANA1+19742726..19748177retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7812.1.S1_at--975--3731Chr01:19719401..19719425 (25 bp)
CTAACTATTGTAAAGCATTGGCTCT
LOC_Os01g35040
Os.7812.1.S1_at--1003--1411Chr01:19719427..19719451 (25 bp)
AGAAAGATGGCCTGTCCTTTATCCT
LOC_Os01g35040
Os.7812.1.S1_at--553--4291Chr01:19719442..19719466 (25 bp)
CCTTTATCCTGCTGGGCTTTAACCA
LOC_Os01g35040
Os.7812.1.S1_at--170--8311Chr01:19719456..19719480 (25 bp)
GGCTTTAACCACCAAGGCCATGAAG
LOC_Os01g35040
Os.7812.1.S1_at--1035--8431Chr01:19719471..19719495 (25 bp)
GGCCATGAAGTTTCAGCACTGCTGG
LOC_Os01g35040
Os.7812.1.S1_at--19--4711Chr01:19719491..19719515 (25 bp)
GCTGGACCAAATGTTATTTCCTTTT
LOC_Os01g35040
Os.7812.1.S1_at--1157--3571Chr01:19719522..19719546 (25 bp)
CATATATCTTGTGTCATTGGTTAAA
LOC_Os01g35040
Os.7812.1.S1_at--985--2171Chr01:19719544..19719568 (25 bp)
AAATTGTAACACTGCGTATGGGAGC
LOC_Os01g35040
Os.7812.1.S1_at--937--831Chr01:19719597..19719621 (25 bp)
ATGGAACACAGTGGCGGTGTCTCCT
LOC_Os01g35040
Os.7812.1.S1_at--137--8371Chr01:19719609..19719633 (25 bp)
GGCGGTGTCTCCTTATGTATACACA
LOC_Os01g35040
Os.7812.1.S1_at--665--10311Chr01:19719660..19719684 (25 bp)
TTTCTCATATTCAGGAGCTTTATTA
LOC_Os01g35040
Target Sequence 
CTAACTATTGTAAAGCATTGGCTCTGAGAAAGATGGCCTGTCCTTTATCCTGCTGGGCTTTAACCACCAAGGCCATGAAG
TTTCAGCACTGCTGGACCAAATGTTATTTCCTTTTGTGTTACATATATCTTGTGTCATTGGTTAAATTGTAACACTGCGT
ATGGGAGCATGGAACACTGGGGCGGTGTATGGGAGTATGGAACACAGTGGCGGTGTCTCCTTATGTATACACAAACCATC
TATAATATTTGATTTGAGCTTTCTCATATTCAGGAGCTTTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis