Browse Element(s) Details


OsAffx.738.1.S1_at

Description gb:NM_193228.1
DB_XREF= gi:34913539
GEN=OJ1029_F04.21
TID=OsAffx.738.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1029_F04.21 (OJ1029_F04.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3503011/11multidrug resistance protein 1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34970Os.11454.1.S1_x_at11/111+19678902..19686396ABC transporter family protein, expressed
LOC_Os01g34970Os.11454.2.S1_at11/111+19678902..19686396ABC transporter family protein, expressed
LOC_Os01g34980OsAffx.23516.1.S1_at11/111+19686522..19687259hypothetical protein
LOC_Os01g34990OsAffx.21280.1.S1_s_at11/111+19690948..19691692hypothetical protein
LOC_Os01g35000OsAffx.11329.1.S1_at11/111+19693549..19694214hypothetical protein
LOC_Os01g35030OsAffx.738.1.S1_at11/111+19705016..19714045multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g35040Os.7812.2.S1_x_at11/111+19716678..19719705PRLI-interacting factor K, putative, expressed
LOC_Os01g35040Os.7812.1.S1_at11/111+19716678..19719705PRLI-interacting factor K, putative, expressed
LOC_Os01g35050Os.41024.1.S1_x_at11/111+19721372..19732327early-responsive to dehydration protein, putative, expressed
LOC_Os01g35050Os.16956.1.S1_s_at11/111+19721372..19732327early-responsive to dehydration protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009926biological_processauxin polar transport
GO:0016020cellular_componentmembrane
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.738.1.S1_at--821--1751Chr01:19705047..19705106 (25 bp)
ACCTGAAATGGCCAGCTGCTGTGAT
LOC_Os01g35030
OsAffx.738.1.S1_at--789--3851Chr01:19705049..19705108 (25 bp)
CTGAAATGGCCAGCTGCTGTGATGG
LOC_Os01g35030
OsAffx.738.1.S1_at--842--8451Chr01:19705055..19705114 (25 bp)
TGGCCAGCTGCTGTGATGGTGGTGG
LOC_Os01g35030
OsAffx.738.1.S1_at--908--3811Chr01:19705099..19705121 (23 bp)
CTGCTGTGATGGTGGTGGGACGTTA
LOC_Os01g35030
OsAffx.738.1.S1_at--347--6231Chr01:19705104..19705128 (25 bp)
GATGGTGGTGGGACGTTACGCGGTC
LOC_Os01g35030
OsAffx.738.1.S1_at--400--10451Chr01:19705119..19705143 (25 bp)
TTACGCGGTCGGGATCGGATCGATC
LOC_Os01g35030
OsAffx.738.1.S1_at--517--7971Chr01:19705130..19705154 (25 bp)
GGATCGGATCGATCGGCGCTCAGCC
LOC_Os01g35030
OsAffx.738.1.S1_at--18--6411Chr01:19705131..19705155 (25 bp)
GATCGGATCGATCGGCGCTCAGCCC
LOC_Os01g35030
OsAffx.738.1.S1_at--65--4571Chr01:19705176..19705200 (25 bp)
GCGCGGCCTCCGAGTCTTGGACGCA
LOC_Os01g35030
OsAffx.738.1.S1_at--893--4691Chr01:19705178..19705202 (25 bp)
GCGGCCTCCGAGTCTTGGACGCACG
LOC_Os01g35030
OsAffx.738.1.S1_at--237--8431Chr01:19705180..19705204 (25 bp)
GGCCTCCGAGTCTTGGACGCACGCA
LOC_Os01g35030
Target Sequence 
ACCTGAAATGGCCAGCTGCTGTGATGGTGGTGGGACGTTACGCGGTCGGGATCGGATCGATCGGCGCTCAGCCCCACCGG
ACGACGGCGACGGCGCGCGGCCTCCGAGTCTTGGACGCACGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis