Browse Element(s) Details


Os.41024.1.S1_x_at

Description gb:BX929169
DB_XREF= gi:41884338
DB_XREF=BX929169
CLONE=p730f04p3
TID=Os.41024.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41024 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1029_F04.25 (OJ1029_F04.25), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3505011/11early-responsive to dehydration protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35030OsAffx.738.1.S1_at11/111+19705016..19714045multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g35040Os.7812.2.S1_x_at11/111+19716678..19719705PRLI-interacting factor K, putative, expressed
LOC_Os01g35040Os.7812.1.S1_at11/111+19716678..19719705PRLI-interacting factor K, putative, expressed
LOC_Os01g35050Os.41024.1.S1_x_at11/111+19721372..19732327early-responsive to dehydration protein, putative, expressed
LOC_Os01g35050Os.16956.1.S1_s_at11/111+19721372..19732327early-responsive to dehydration protein, putative, expressed
LOC_Os01g35059NANA1+19741055..19741451NA
LOC_Os01g35070NANA1+19742726..19748177retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35080Os.46995.1.S1_x_at1/111+19751547..19753930retrotransposon protein, putative, unclassified
LOC_Os01g35080Os.46995.1.S1_at1/111+19751547..19753930retrotransposon protein, putative, unclassified
LOC_Os01g35090NANA1+19754087..19759617retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41024.1.S1_x_at--514--131Chr01:19723074..19723098 (25 bp)
ATTAATCGTATCACAGCTGCTTCTC
LOC_Os01g35050
Os.41024.1.S1_x_at--174--2211Chr01:19723031..19723055 (25 bp)
AAAGGTGCTGGCCAGTCAACACCGG
LOC_Os01g35050
Os.41024.1.S1_x_at--1029--8791Chr01:19722999..19723023 (25 bp)
TGTTCTCCCTGTTGTAACCTTTTAT
LOC_Os01g35050
Os.41024.1.S1_x_at--461--5311Chr01:19721750..19721774 (25 bp)
GAAGGATACCCTAGAACGCGCAAGA
LOC_Os01g35050
Os.41024.1.S1_x_at--159--6011Chr01:19721727..19721751 (25 bp)
GAGAGCCAGGGTTCGACCTCAAAGG
LOC_Os01g35050
Os.41024.1.S1_x_at--827--1852Chr04:28148421..28148552 (24 bp)
ACGACGAGAAGTTCTCCATCTCCGA
NONE
Os.41024.1.S1_x_at--898--3951Chr01:19721619..19721643 (25 bp)
CGGAGCAGGTTCTCGTGGCGACAAA
LOC_Os01g35050
Os.41024.1.S1_x_at--1108--2191Chr01:19721599..19721623 (25 bp)
ACAAAGCGCCAGTCCAGACGGAACA
LOC_Os01g35050
Os.41024.1.S1_x_at--715--3351Chr01:19721576..19721600 (25 bp)
CACCCCAGTTCCGAGTAAATACAAT
LOC_Os01g35050
Os.41024.1.S1_x_at--410--6931Chr01:19721479..19721503 (25 bp)
GTAGGTTTGTAGTTTCGACATGTAC
LOC_Os01g35050
Os.41024.1.S1_x_at--903--8871Chr01:19721430..19721454 (25 bp)
TGAGGATCGGTTTTGTTTACAGCAA
LOC_Os01g35050
Target Sequence 
ATTAATCGTATCACAGCTGCTTCTCCTTGGANTTACTAANGCACAAAAGGTGCTGGCCAGTCAACACCGGTGCTCCTTGT
TCTCCCTGTTGTAACCTTTTATTTCTATAAATACTGCAAGAATCGCTATGAGCCTGCTTTTGTGGAATATCCATTACAGG
ATGCAATGCGGAAGGATACCCTAGAACGCGCAAGAGAGCCAGGGTTCGACCTCAAAGGATACCTGATGAATGCCTACATC
CACCCGGTGTTCAAAGGCGACGAGGACGACGAGAAGTTCTCCATCTCCGACGAACCAGAGGCGGAGCAGGTTCTCGTGGC
GACAAAGCGCCAGTCCAGACGGAACACCCCAGTTCCGAGTAAATACAATGGCTCTGAATCACCTTCCCTTGCTGAAATTG
TAAATGATCAACGGCTATAAATATAATAGAGGTGATGGCTAGTAGGTTTGTAGTTTCGACATGTACNTTAAGTAAAAGAG
CNCCNATAATGGTTTTGAGGATCGGTTTTGTTTACAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41024.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis