Browse Element(s) Details


OsAffx.21280.1.S1_s_at

Description tigr:9629.m03289
TID=OsAffx.21280.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3499011/11hypothetical protein
LOC_Os06g2486011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34950OsAffx.9043.1.S1_at11/111+19665790..19666983hypothetical protein
LOC_Os01g34960OsAffx.15648.1.S1_at1/111+19672484..19674235hypothetical protein
LOC_Os01g34970Os.11454.1.S1_x_at11/111+19678902..19686396ABC transporter family protein, expressed
LOC_Os01g34970Os.11454.2.S1_at11/111+19678902..19686396ABC transporter family protein, expressed
LOC_Os01g34980OsAffx.23516.1.S1_at11/111+19686522..19687259hypothetical protein
LOC_Os01g34990OsAffx.21280.1.S1_s_at11/111+19690948..19691692hypothetical protein
LOC_Os01g35000OsAffx.11329.1.S1_at11/111+19693549..19694214hypothetical protein
LOC_Os01g35030OsAffx.738.1.S1_at11/111+19705016..19714045multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g35040Os.7812.2.S1_x_at11/111+19716678..19719705PRLI-interacting factor K, putative, expressed
LOC_Os01g35040Os.7812.1.S1_at11/111+19716678..19719705PRLI-interacting factor K, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21280.1.S1_s_at--1129--5412Chr01:19691004..19691028 (25 bp)
GAAGCCGCTGGTGTCGGTGGAGCCC
LOC_Os01g34990
OsAffx.21280.1.S1_s_at--1087--8612Chr01:19691012..19691036 (25 bp)
TGGTGTCGGTGGAGCCCGTGCTCGC
LOC_Os01g34990
OsAffx.21280.1.S1_s_at--1156--8212Chr01:19691050..19691074 (25 bp)
GGCAAGGGAGAGACCACAGCCTCCG
LOC_Os01g34990
OsAffx.21280.1.S1_s_at--877--4932Chr01:19691078..19691102 (25 bp)
GCATTGGTGCCCGTGGTCGTCACCG
LOC_Os01g34990
OsAffx.21280.1.S1_s_at--944--8592Chr01:19691082..19691106 (25 bp)
TGGTGCCCGTGGTCGTCACCGCTTG
LOC_Os01g34990
OsAffx.21280.1.S1_s_at--33--4252Chr01:19691088..19691112 (25 bp)
CCGTGGTCGTCACCGCTTGCTTCGG
LOC_Os01g34990
OsAffx.21280.1.S1_s_at--436--5452Chr01:19691216..19691240 (25 bp)
GAACGCAAACATGTTCCCACCCTCA
LOC_Os01g34990
OsAffx.21280.1.S1_s_at--605--1712Chr01:19691276..19691300 (25 bp)
ACCACCGGAGCAGAAGGAGGCATCT
LOC_Os01g34990
OsAffx.21280.1.S1_s_at--906--2912Chr01:19691289..19691313 (25 bp)
AAGGAGGCATCTTCTTGTGCGGGAA
LOC_Os01g34990
OsAffx.21280.1.S1_s_at--457--912Chr01:19691293..19691317 (25 bp)
AGGCATCTTCTTGTGCGGGAACGAG
LOC_Os01g34990
OsAffx.21280.1.S1_s_at--266--774Chr02:31859711..31859899 (25 bp)
ATGTCGCCCATGGCGAAGTGCATCA
NONE
Target Sequence 
GAAGCCGCTGGTGTCGGTGGAGCCCGTGCTCGCCGGCATCAGGGAAGGCAAGGGAGAGACCACAGCCTCCGTTGGCATTG
GTGCCCGTGGTCGTCACCGCTTGCTTCGGCGAGAACGCAAACATGTTCCCACCCTCACCGCCTCCGCCGCGGCCACCGCC
CTTGTCCCGCCAACCACCGGAGCAGAAGGAGGCATCTTCTTGTGCGGGAACGAGGGCAGGAGGAAGCATCGCCGCCGGGT
GCGGCGCAGCGCGTGGAGAAGGCGACCGCGGAGTGCGCGTGCTTTATGCGGAGCTCGGCGAGGTGGTGGCACGACGTCGC
CAGCGGCTTATCGTGCTCTCTTCAGGCGCTCGCTGTCCCCGCCGACCACCTTATCCTTGCCACCGTCGAGGATCGTCATG
CCGCCCCTGCCCCAGCCGCATCAATCCCCTTTCACCCGGCTGCCGTTGGTCCCCAGTGACTCCAGGAGCTCCACGATGTC
GCCCATGGCGAAGTGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21280.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis