Browse Element(s) Details


OsAffx.9043.1.S1_at

Description gb:NM_193218.1
DB_XREF= gi:34913519
GEN=OJ1029_F04.11
TID=OsAffx.9043.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1029_F04.11 (OJ1029_F04.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3495011/11hypothetical protein
LOC_Os03g377901/11hAT dimerisation domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34940OsAffx.21282.1.S1_at7/111+19651660..19652316hypothetical protein
LOC_Os01g34940OsAffx.7080.1.S1_x_at1/111+19651660..19652316hypothetical protein
LOC_Os01g34950OsAffx.9043.1.S1_at11/111+19665790..19666983hypothetical protein
LOC_Os01g34960OsAffx.15648.1.S1_at1/111+19672484..19674235hypothetical protein
LOC_Os01g34970Os.11454.1.S1_x_at11/111+19678902..19686396ABC transporter family protein, expressed
LOC_Os01g34970Os.11454.2.S1_at11/111+19678902..19686396ABC transporter family protein, expressed
LOC_Os01g34980OsAffx.23516.1.S1_at11/111+19686522..19687259hypothetical protein
LOC_Os01g34990OsAffx.21280.1.S1_s_at11/111+19690948..19691692hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9043.1.S1_at--260--8011Chr01:19666822..19666846 (25 bp)
GGATGGTACCAATGTAAGTGATCAT
LOC_Os01g34950
OsAffx.9043.1.S1_at--696--231Chr01:19666791..19666815 (25 bp)
ATATTTAATTCACCTGCTACAGAGT
LOC_Os01g34950
OsAffx.9043.1.S1_at--218--2151Chr01:19666773..19666797 (25 bp)
ACAGAGTCTGCTTGTGTTGATGAAC
LOC_Os01g34950
OsAffx.9043.1.S1_at--573--6313Chr03:20911853..20911873 (21 bp)
GATGAACAACTAGTTTTTACTACCG
LOC_Os03g37790
OsAffx.9043.1.S1_at--335--10052Chr08:14652859..14652883 (25 bp)
TAGTTTTTACTACCGATATTTATGA
NONE
OsAffx.9043.1.S1_at--78--7631Chr01:19666709..19666733 (25 bp)
GGGACAAACTTGACAATAAAGCTAG
LOC_Os01g34950
OsAffx.9043.1.S1_at--460--10211Chr01:19666012..19666036 (25 bp)
TATTATCATTGATTCCACCCCAAAT
LOC_Os01g34950
OsAffx.9043.1.S1_at--142--6591Chr01:19666002..19666026 (25 bp)
GATTCCACCCCAAATGTGAGTCATC
LOC_Os01g34950
OsAffx.9043.1.S1_at--17--691Chr01:19665969..19665993 (25 bp)
ATGACTTTGTTGGTCCGATGTGTTA
LOC_Os01g34950
OsAffx.9043.1.S1_at--999--7791Chr01:19665958..19665982 (25 bp)
GGTCCGATGTGTTAATATGTCCTAT
LOC_Os01g34950
OsAffx.9043.1.S1_at--830--7411Chr01:19665950..19665974 (25 bp)
GTGTTAATATGTCCTATGGCAAAAT
LOC_Os01g34950
Target Sequence 
GGATGGTACCAATGTAAGTGATCATGAGAATATATTTAATTCACCTGCTACAGAGTCTGCTTGTGTTGATGAACAACTAG
TTTTTACTACCGATATTTATGATCGAAGAAATTGGGACAAACTTGACAATAAAGCTAGAGGCAAAATATTTTCTATTATC
ATTGATTCCACCCCAAATGTGAGTCATCAAGAACAAATGACTTTGTTGGTCCGATGTGTTAATATGTCCTATGGCAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis