Browse Element(s) Details


OsAffx.23516.1.S1_at

Description tigr:9629.m03288
TID=OsAffx.23516.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3498011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34950OsAffx.9043.1.S1_at11/111+19665790..19666983hypothetical protein
LOC_Os01g34960OsAffx.15648.1.S1_at1/111+19672484..19674235hypothetical protein
LOC_Os01g34970Os.11454.1.S1_x_at11/111+19678902..19686396ABC transporter family protein, expressed
LOC_Os01g34970Os.11454.2.S1_at11/111+19678902..19686396ABC transporter family protein, expressed
LOC_Os01g34980OsAffx.23516.1.S1_at11/111+19686522..19687259hypothetical protein
LOC_Os01g34990OsAffx.21280.1.S1_s_at11/111+19690948..19691692hypothetical protein
LOC_Os01g35000OsAffx.11329.1.S1_at11/111+19693549..19694214hypothetical protein
LOC_Os01g35030OsAffx.738.1.S1_at11/111+19705016..19714045multidrug resistance protein 1 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23516.1.S1_at--1023--5931Chr01:19686944..19686968 (25 bp)
GAGCAGCCAGATGAGCCGGAGAATC
LOC_Os01g34980
OsAffx.23516.1.S1_at--934--1231Chr01:19686936..19686960 (25 bp)
AGATGAGCCGGAGAATCGCCCGGAC
LOC_Os01g34980
OsAffx.23516.1.S1_at--431--1471Chr01:19686925..19686949 (25 bp)
AGAATCGCCCGGACCCGCTGGTGGT
LOC_Os01g34980
OsAffx.23516.1.S1_at--1059--2031Chr01:19686787..19686811 (25 bp)
ACTTCATGGACTGCTGGGACGCCTT
LOC_Os01g34980
OsAffx.23516.1.S1_at--652--7631Chr01:19686772..19686796 (25 bp)
GGGACGCCTTCTACTACCACGTCAA
LOC_Os01g34980
OsAffx.23516.1.S1_at--308--8851Chr01:19686717..19686741 (25 bp)
TGATCAGGCTGCTCCGCGCTTCTTC
LOC_Os01g34980
OsAffx.23516.1.S1_at--614--9171Chr01:19686653..19686677 (25 bp)
TGCCTCGTCTCCTTGGACAACGACG
LOC_Os01g34980
OsAffx.23516.1.S1_at--1149--3371Chr01:19686608..19686632 (25 bp)
CAGCCTTTGTGTTGCTTTGATGACG
LOC_Os01g34980
OsAffx.23516.1.S1_at--146--7411Chr01:19686600..19686624 (25 bp)
GTGTTGCTTTGATGACGTGCCGTTT
LOC_Os01g34980
OsAffx.23516.1.S1_at--1087--9171Chr01:19686583..19686607 (25 bp)
TGCCGTTTGGTGTCGTCATCAAGCA
LOC_Os01g34980
OsAffx.23516.1.S1_at--596--4371Chr01:19686557..19686581 (25 bp)
CCAAAGGGTTGGAAGATGATCGATC
LOC_Os01g34980
Target Sequence 
GAGCAGCCAGATGAGCCGGAGAATCGCCCGGACCCGCTGGTGGTGCTGCAGCAGGCGGAGTCCCTCGCGGAGTGCGCGCT
GCAGCACTACAACGGCGACGCCGCCAACGAGGTCAAGTACGAGCTCGTCGCCGCCACCGCCACCGCCACGGCGAGCGACT
TCATGGACTGCTGGGACGCCTTCTACTACCACGTCAACTTCTTCGCCAGGGCCGCCGCCGGCGCCGATGATCAGGCTGCT
CCGCGCTTCTTCTTCGCCGAGCTGCGCCACCGCACCGCCATGCTCCCGACCTGCCTCGTCTCCTTGGACAACGACGACGA
GATACAGTTGGATCCCCAGCCTTTGTGTTGCTTTGATGACGTGCCGTTTGGTGTCGTCATCAAGCATCCAAAGGGTTGGA
AGATGATCGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis