Browse Element(s) Details


OsAffx.11329.1.S1_at

Description tigr:9629.m03290
TID=OsAffx.11329.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3500011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34960OsAffx.15648.1.S1_at1/111+19672484..19674235hypothetical protein
LOC_Os01g34970Os.11454.1.S1_x_at11/111+19678902..19686396ABC transporter family protein, expressed
LOC_Os01g34970Os.11454.2.S1_at11/111+19678902..19686396ABC transporter family protein, expressed
LOC_Os01g34980OsAffx.23516.1.S1_at11/111+19686522..19687259hypothetical protein
LOC_Os01g34990OsAffx.21280.1.S1_s_at11/111+19690948..19691692hypothetical protein
LOC_Os01g35000OsAffx.11329.1.S1_at11/111+19693549..19694214hypothetical protein
LOC_Os01g35030OsAffx.738.1.S1_at11/111+19705016..19714045multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g35040Os.7812.2.S1_x_at11/111+19716678..19719705PRLI-interacting factor K, putative, expressed
LOC_Os01g35040Os.7812.1.S1_at11/111+19716678..19719705PRLI-interacting factor K, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11329.1.S1_at--848--5931Chr01:19694115..19694139 (25 bp)
GAGCAGTTTTGTCCTCTGCCACTGT
LOC_Os01g35000
OsAffx.11329.1.S1_at--410--4511Chr01:19693995..19694019 (25 bp)
GCCGATCACACCACGGACAGCTTGA
LOC_Os01g35000
OsAffx.11329.1.S1_at--415--1931Chr01:19693983..19694007 (25 bp)
ACGGACAGCTTGATCACCTTCGCGA
LOC_Os01g35000
OsAffx.11329.1.S1_at--320--4931Chr01:19693976..19694000 (25 bp)
GCTTGATCACCTTCGCGAGCACCGT
LOC_Os01g35000
OsAffx.11329.1.S1_at--917--4411Chr01:19693893..19693917 (25 bp)
GCCATGGATGAGAAGCACGCGGAAT
LOC_Os01g35000
OsAffx.11329.1.S1_at--164--2731Chr01:19693881..19693905 (25 bp)
AAGCACGCGGAATACCTCGCGGAGT
LOC_Os01g35000
OsAffx.11329.1.S1_at--328--1871Chr01:19693647..19693671 (25 bp)
ACGACCTGCGTCGTCTCATTGAACA
LOC_Os01g35000
OsAffx.11329.1.S1_at--864--1751Chr01:19693644..19693668 (25 bp)
ACCTGCGTCGTCTCATTGAACAACG
LOC_Os01g35000
OsAffx.11329.1.S1_at--887--6471Chr01:19693612..19693636 (25 bp)
GATACAGATGGATCCCCAGCCTTCC
LOC_Os01g35000
OsAffx.11329.1.S1_at--182--4251Chr01:19693589..19693613 (25 bp)
CCGGTTGCTTTGATGACGAGCCGTT
LOC_Os01g35000
OsAffx.11329.1.S1_at--1031--8851Chr01:19693579..19693603 (25 bp)
TGATGACGAGCCGTTTGATGTCATC
LOC_Os01g35000
Target Sequence 
GAGCAGTTTTGTCCTCTGCCACTGTCGCCGCCTTATTCCCCGGCACAGCCGTCGCCGCCGCCGACATCGCCACCGGCATC
GCCGACGCTGCTGCCCACGTCTCCTCTCTCCGACGACCATGCCGATCACACCACGGACAGCTTGATCACCTTCGCGAGCA
CCGTCGACGTCGCCGCGGACGACGACTTCTACTTCGACTTCGACTTCGACGCCGACGACGACGCCATGGATGAGAAGCAC
GCGGAATACCTCGCGGAGTGCGCGCTGAAGCACTACAACGGCGACGCCGCCAACGAGGCCAAGTACGAGCTCGTCGCCGC
CTCCGCCACGGCGAGCGGCTTCATGGACTGCCGCGGCGCCTTCCACTTCCACGTCAGCTTCTTCGCCAGGGCCGCCGGCG
CCGGCGCGGCGGAGGCGGCTCCCCGCTTCTTCTTGGCCGAGCTGCACCACCGCATCGCCATGCTCCCGACGACCTGCGTC
GTCTCATTGAACAACGACGACGAGATACAGATGGATCCCCAGCCTTCCGGTTGCTTTGATGACGAGCCGTTTGATGTCAT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis